Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1130 ATGGCAAGACACAGGACGACTCCTCCCGTCCAAAATCGTTTTCATTACTTTCTGCTGGTGCTTTGTTGCTGCCTGGTGTTTGTTGCATCCTTGAACGAGGAGGGAAACTTTCTTTTGGAGTTCAGAAGATCGCTTATTGACCCTGGTAACAATCTTGCAAGCTGGAGTGCCATGGATTTAACTCCCTGCAATTGGACTGGAATATCGTGCAACGATTCTAAGGTAACTTCTATAAATCTCCATGGGCTCAACTTGTCGGGTACTTTGTCTTCTAGATTCTGCCAACTCCCCCAGTTAACGTCCTTGAACCTGTCCAAAAACTTCATCTCCGGCCCCATTTCTGAAAATCTTGCCTACTGTCGTCATCTCGAGATTTTAGACCTTTGCACTAACCGGTTCCACGACCAATTACCAACCAAACTCTTCAAACTCGCCCCCCTCAAAGTTCTTTATCTGTGTGAGAATTATATTTATGGAGAAATCCCTGATGAGATTGGAAGCTTAACTTCATTGAAGGAGCTTGTGATTTACAGTAACAATCTCACAGGTGCAATTCCCCGGTCAATTAGTAAGCTCAAAAGGCTTCAGTTTATCAGGGCGGGTCACAATTTCCTGTCAGGTTCAATACCACCTGAAATGAGCGAATGCGAGAGCTTAGAACTTCTGGGGCTGGCGCAGAATAGGCTTGAAGGTCCTATTCCTGTGGAGCTTCAGAGACTTAAACATCTTAACAATTTGATCCTCTGGCAAAACCTTTTGACTGGTGAGATTCCACCCGAGATCGGTAATTTCAGTAGCCTAGAGATGCTTGCACTGCATGACAATTCTTTCACCGGGAGCCCTCCCAAAGAGCTTGGAAAGCTGAACAAGCTCAAAAGATTGTACATTTATACCAACCAGTTGAATGGAACGATTCCTCAGGAGCTAGGTAACTGTACTAGTGCAGTTGAGATAGATCTTTCTGAAAATCATTTAACTGGGTTTATTCCAAAGGAGTTGGCCCATATTCCTAACCTCCGGTTGCTTCATCTTTTCGAAAACCTTCTCCAGGGGAGTATCCCCAAGGAACTTGGACAGTTGAAGCAGCTGCGGAATTTAGATTTGTCCATAAATAACCTGACCGGCACCATCCCTTTAGGCTTTCAAAGCCTCACATTCTTGGAAGATTTACAGCTTTTCGACAATCATCTTGAGGGTACTATTCCTCCTCTCATTGGAGTTAACAGTAACCTTTCCATTCTTGACATGTCCGCCAACAATCTTTCAGGCCACATACCAGCACAGCTCTGCAAATTCCAGAAATTGATATTCCTAAGCCTCGGGTCTAATAGGTTATCGGGAAACATCCCTGATGACCTGAAGACATGCAAGCCTCTAATACAACTAATGTTGGGAGATAACCAGCTCACAGGAAGCCTCCCTGTTGAATTGTCCAAACTTCAAAATCTTTCAGCTCTTGAACTCTATCAGAACCGATTCTCTGGGCTAATATCGCCAGAAGTAGGCAAACTTGGGAATCTGAAGAGGCTGCTCTTGTCCAACAATTATTTTGTTGGGCATATACCTCCTGAGATTGGACAATTGGAGGGACTCGTTACTTTTAATGTTTCATCAAACTGGCTATCCGGAAGTATTCCCCGTGAGTTGGGAAACTGTATAAAGCTACAGAGGCTTGATTTAAGTAGGAACAGCTTCACTGGCAATCTTCCAGAAGAGCTTGGCAAGCTAGTGAATCTGGAATTGCTGAAACTTTCAGATAACAGACTGAGTGGACTGATACCAGGCAGCTTAGGGGGCCTGACCCGGCTTACAGAACTACAAATGGGGGGCAATCTTTTCAACGGCAGCATTCCCGTTGAACTTGGCCATCTTGGTGCTCTCCAGATCTCCCTCAACATTAGCCATAACGCGCTCTCAGGTACAATTCCAGGTGATTTGGGGAAATTGCAGATGCTGGAATCAATGTACTTGAATAACAATCAGCTTGTTGGTGAAATTCCCGCTTCAATTGGTGACTTGATGAGCCTCCTGGTATGCAACCTTTCTAACAATAACCTGGTAGGAACAGTGCCAAACACCCCTGTTTTTCAGAGGATGGATTCCAGCAATTTTGGTGGAAACAGTGGCTTGTGCAGAGTCGGTTCATACCGTTGTCATCCTTCTTCAACCCCTTCATATAGTCCAAAAGGAAGCTGGATAAAGGAGGGTTCTTCCAGAGAAAAAATAGTAAGCATCACTTCTGTGGTTGTCGGGTTAGTTTCTTTGATGTTTACTGTGGGCGTTTGTTGGGCGATAAAGCATCGTAGGCGAGCTTTTGTTTCACTTGAAGATCAAATAAAACCGAATGTGTTGGATAACTACTACTTCCCCAAAGAAGGGCTCACATATCAGGACCTCTTGGAAGCCACTGGAAATTTTTCAGAGAGCGCAATCATCGGAAGAGGAGCCTGTGGCACTGTCTACAAGGCTGCTATGGCTGATGGTGAGTTGATTGCAGTCAAAAAGCTGAAATCCCGGGGAGATGGAGCTACTGCAGACAACAGCTTCCGCGCTGAGATATCCACTCTTGGGAAAATCAGGCACCGAAACATTGTGAAGCTTCATGGATTCTGCTACCACCAGGACTCTAATCTTCTGTTGTATGAGTACATGGAAAATGGCAGCCTAGGAGAGCAGCTTCATGGGAAGGAAGCAAATTGTTTGCTTGACTGGAATGCTAGGTATAAAATTGCTCTTGGGTCAGCAGAGGGCCTGTCCTATCTCCATTACGACTGTAAGCCCCAAATCATTCACCGGGATATAAAATCAAACAACATTTTACTCGATGAGATGCTTCAAGCCCATGTGGGAGATTTTGGTTTGGCAAAATTGATGGACTTCCCCTGCTCCAAATCCATGTCTGCTGTTGCAGGTTCATATGGCTACATTGCCCCTGAGTATGCTTACACAATGAAAATTACAGAGAAATGTGACATATACAGCTTTGGGGTTGTTCTGCTTGAACTGATCACAGGAAGGACCCCAGTGCAACCCCTGGAACAGGGAGGGGACCTGGTCACTTGGGTTAGAAGATCAATTTGTAATGGGGTTCCAACATCTGAAATCTTGGACAAACGGCTAGATCTCAGTGCTAAAAGGACAATCGAGGAGATGTCACTAGTCCTCAAGATTGCATTGTTCTGTACCAGTCAGTCCCCGCTTAATAGGCCAACAATGAGAGAAGTCATTAACATGCTGATGGATGCGAGGGAGGCGTATTGTGATTCACCAGTGTCTCCAACATCAGAGACCCCGTTAGATGATGACGCTTCTTGTAGAGGTTTTATGGAACCATAG 3336 0.449 MARHRTTPPVQNRFHYFLLVLCCCLVFVASLNEEGNFLLEFRRSLIDPGNNLASWSAMDLTPCNWTGISCNDSKVTSINLHGLNLSGTLSSRFCQLPQLTSLNLSKNFISGPISENLAYCRHLEILDLCTNRFHDQLPTKLFKLAPLKVLYLCENYIYGEIPDEIGSLTSLKELVIYSNNLTGAIPRSISKLKRLQFIRAGHNFLSGSIPPEMSECESLELLGLAQNRLEGPIPVELQRLKHLNNLILWQNLLTGEIPPEIGNFSSLEMLALHDNSFTGSPPKELGKLNKLKRLYIYTNQLNGTIPQELGNCTSAVEIDLSENHLTGFIPKELAHIPNLRLLHLFENLLQGSIPKELGQLKQLRNLDLSINNLTGTIPLGFQSLTFLEDLQLFDNHLEGTIPPLIGVNSNLSILDMSANNLSGHIPAQLCKFQKLIFLSLGSNRLSGNIPDDLKTCKPLIQLMLGDNQLTGSLPVELSKLQNLSALELYQNRFSGLISPEVGKLGNLKRLLLSNNYFVGHIPPEIGQLEGLVTFNVSSNWLSGSIPRELGNCIKLQRLDLSRNSFTGNLPEELGKLVNLELLKLSDNRLSGLIPGSLGGLTRLTELQMGGNLFNGSIPVELGHLGALQISLNISHNALSGTIPGDLGKLQMLESMYLNNNQLVGEIPASIGDLMSLLVCNLSNNNLVGTVPNTPVFQRMDSSNFGGNSGLCRVGSYRCHPSSTPSYSPKGSWIKEGSSREKIVSITSVVVGLVSLMFTVGVCWAIKHRRRAFVSLEDQIKPNVLDNYYFPKEGLTYQDLLEATGNFSESAIIGRGACGTVYKAAMADGELIAVKKLKSRGDGATADNSFRAEISTLGKIRHRNIVKLHGFCYHQDSNLLLYEYMENGSLGEQLHGKEANCLLDWNARYKIALGSAEGLSYLHYDCKPQIIHRDIKSNNILLDEMLQAHVGDFGLAKLMDFPCSKSMSAVAGSYGYIAPEYAYTMKITEKCDIYSFGVVLLELITGRTPVQPLEQGGDLVTWVRRSICNGVPTSEILDKRLDLSAKRTIEEMSLVLKIALFCTSQSPLNRPTMREVINMLMDAREAYCDSPVSPTSETPLDDDASCRGFMEP* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1130 1111 Gene3D Ribonuclease Inhibitor 439 722 IPR032675 -
Vvi19g1130 1111 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 30 185 - -
Vvi19g1130 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Vvi19g1130 1111 Gene3D Ribonuclease Inhibitor 141 233 IPR032675 -
Vvi19g1130 1111 Gene3D Ribonuclease Inhibitor 234 329 IPR032675 -
Vvi19g1130 1111 Gene3D Transferase(Phosphotransferase) domain 1 884 1092 - -
Vvi19g1130 1111 Gene3D Phosphorylase Kinase; domain 1 774 883 - -
Vvi19g1130 1111 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 186 280 - -
Vvi19g1130 1111 MobiDBLite consensus disorder prediction 1089 1111 - -
Vvi19g1130 1111 SUPERFAMILY L domain-like 49 397 - -
Vvi19g1130 1111 SUPERFAMILY Protein kinase-like (PK-like) 783 1079 IPR011009 -
Vvi19g1130 1111 SMART LRR_typ_2 264 287 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 504 528 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 649 673 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 384 408 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 360 383 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 576 599 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 600 624 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 96 120 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 288 312 IPR003591 -
Vvi19g1130 1111 SMART LRR_typ_2 168 192 IPR003591 -
Vvi19g1130 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 281 384 - -
Vvi19g1130 1111 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Vvi19g1130 1111 Pfam Leucine rich repeat 554 612 IPR001611 GO:0005515
Vvi19g1130 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 884 1095 - -
Vvi19g1130 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 480 1080 - -
Vvi19g1130 1111 Gene3D Ribonuclease Inhibitor 330 430 IPR032675 -
Vvi19g1130 1111 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vvi19g1130 1111 ProSiteProfiles Protein kinase domain profile. 806 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1130 1111 Pfam Protein kinase domain 807 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1130 1111 SUPERFAMILY L domain-like 453 714 - -
Vvi19g1130 1111 Gene3D Ribonuclease Inhibitor 33 140 IPR032675 -
Vvi19g1130 1111 SMART serkin_6 806 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1130 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 770 883 - -
Vvi19g1130 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 408 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1130 Vvi-Chr19 18056453 18061141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1130 53 1089 Receptor kinase-like Gene Family AT1G73080 38.469 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi19g1130 Pkinase 2.6e-47 CL0016