Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1124 ATGATGGAGTCTTGCGACTGTATTGATCCCCCATGGCCAGGGGATGAACTGCTAATGAAGTACCAATACATTTCAGATTTCTTTATTGCACTTGCTTATTTTTCCATCCCTCTAGAGCTGATCTACTTTGTTAAGAAATCTGCAGTGTTTCCCTATAGATGGGTGCTTGTGCAGTTTGGTGCTTTTATTGTCCTATGTGGAGCAACGCATCTTATTAACTTGTGGACTTTTGGAATGCATTCGAGAAATGTTGAAGTAGTTATGACCACTGCAAAGGTTTTGACTGCTGTGGTGTCTTGTGTAACTGCCCTAATGCTGGTTCACATTATTCCTGATCTACTGAGTGTGAAGACTAGAGAACTATTTTTGAAAAACAAAGCTGCTGAGCTTGATCGAGAAATGGGTCTGATTCGTACGCAGGAAGAAACAGGGAGGCATGTTAGAATGCTGACTCATGAGATCAGAAGCACTCTTGATAGGCATACTATACTAAAGACCACGCTTATAGAGTTAGGTAGAACTTTGTCTCTGGAAGAGTGTGCATTGTGGATGCCAACACGTACTGGCTTAGAGCTTCAACTTTCCTACACTCTGCGTCAACAGAATCCTGTTGGCTTTACCATACCCATTCAGCATCCTGTTATTAATCAAGTCTTCAGTAGCAATCGTGCAGTTAAGATATCACCAAATTGCCCAGTGGCAAGATTGCGGCCTCTTGCAGGAAAATACATGCCTGGGGAGGTTGTTGCTGTGCGTGTACCACTTCTACATCTCTCTAATTTCCAAATCAATGACTGGCCTGAGCTTTCAACAAAGCGCTATGCTTTGATGGTTTTGATGCTTCCCTCAGACAGTGCAAGGCAATGGCATGTTCATGAACTGGAACTTGTTGAAGTTGTTGCTGACCAGGTGGCAGTGGCTCTTTCACATGCTGCAATCTTAGAAGAGTCAATGAGAGCAAGGGATCTTCTTATGGAGCAGAATGTTGCACTTGACCTAGCCAGGAGAGAAGCAGAAACAGCAGTTCGTGCTCGCAATGATTTCTTGGCTGTTATGAACCATGAGATGAGAACACCTATGCATGCCATCATTGCACTCTCATCCTTGCTGCAAGAAACTGAGCTGACTCCTGAGCAGCGCCTGATGGTTGAAGCCATCCTAAAGAGCAGTAGTCTTTTGGCTACACTCATAAATGATGTACTAGATCTTTCAAGGCTTGAAGATGGTAGCCTTCAACTTGAAAATGGAACTTTTAACCTTCATGCGTTATTCAGGGAGGTCCTTTACTTGATCAAGCCTATTGCGTCTGTCAAAAAGTTGTTTGTTTCATCAAGTTTGGCTCCAGACTTGCCTGAATTTGCTGTTGGTGATGAAAAACGCCTCATGCAAATTATGTTAAATGTTGTTGGTAATGCTGTGAAATTCTCGAACGAGGGAAACATCTCAATTTTTGCTTTTATTGCAAAATCAGAATCTTTAAGAGATTCTCGCGCGCCAGATTTTTTCCCAGTGCACAGTGATAATCACTTTTATTTGCGTGTACAGGTTAAGGATTCAGGAGCAGGAATTGACCCCCAAGATATTTCTAAGCTGTTCACCAAATTTGCACAATGTCAATCACTAGCAGCTAGAAATTCTGGTGGCAGTGGACTTGGCCTTGCAATTTGTAAGAGGTTTGTAAATCTTATGGGAGGACATATTTGGATAGAAAGTGAAGGGCTTGGAAAGGGAAGCACTGCTGTCTTCATTGTGAAACTTGGGATTCCAGAGTACTCAAATGAATCTAAGCTCCCTTTTTTTCCTAAAGTGTCAGCAAACCATTGTCAGACAAATTTTCCAGGACTCAAAGTTCTTGTTATGGATGACAATGGGGTTAGCAGGTCAGTGACAAAGGGTCTGCTTGTGCACCTGGGATGTGATGTAACAACTGTAAGCTCAGCAGATGACTGCTTGCGGGTTGTTTCTCAGGAACACAATGTGGTGTTCTTAGATGTGTGTATGCCTGGTGTTGATGGTTATGAAGTTGCTATTCGTATACATGAAAAATTTACAACATGTCGTCAAGGGCCATTGCTGGTAGCACTTATGGGAAACACGGATAGGGTGACAAAGGAGAACTACTTGAGGGTGGGTATAAATGGAGTTGTACTGAAACCTGTTTCAGTTGATAAGATGAGGTGCGTATTATCAGAGGTTCTAGAGCACCGTTTTCTGTTTGAGACCTGTTGA 2229 0.4262 MMESCDCIDPPWPGDELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFGMHSRNVEVVMTTAKVLTAVVSCVTALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLIELGRTLSLEECALWMPTRTGLELQLSYTLRQQNPVGFTIPIQHPVINQVFSSNRAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIKPIASVKKLFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNEGNISIFAFIAKSESLRDSRAPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISKLFTKFAQCQSLAARNSGGSGLGLAICKRFVNLMGGHIWIESEGLGKGSTAVFIVKLGIPEYSNESKLPFFPKVSANHCQTNFPGLKVLVMDDNGVSRSVTKGLLVHLGCDVTTVSSADDCLRVVSQEHNVVFLDVCMPGVDGYEVAIRIHEKFTTCRQGPLLVALMGNTDRVTKENYLRVGINGVVLKPVSVDKMRCVLSEVLEHRFLFETC* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1124 742 CDD HATPase_EvgS-ArcB-TorS-like 461 586 - -
Vvi19g1124 742 CDD REC_ETR-like 615 729 - -
Vvi19g1124 742 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 3 735 - -
Vvi19g1124 742 ProSiteProfiles Histidine kinase domain profile. 351 590 IPR005467 -
Vvi19g1124 742 Gene3D - 409 592 IPR036890 -
Vvi19g1124 742 Gene3D - 609 741 - -
Vvi19g1124 742 PRINTS Bacterial sensor protein C-terminal signature 512 526 IPR004358 GO:0016310|GO:0016772
Vvi19g1124 742 PRINTS Bacterial sensor protein C-terminal signature 547 565 IPR004358 GO:0016310|GO:0016772
Vvi19g1124 742 PRINTS Bacterial sensor protein C-terminal signature 530 540 IPR004358 GO:0016310|GO:0016772
Vvi19g1124 742 FunFam Ethylene receptor 1 311 407 - -
Vvi19g1124 742 Pfam GAF domain 159 308 IPR003018 GO:0005515
Vvi19g1124 742 Gene3D - 138 309 IPR029016 -
Vvi19g1124 742 Gene3D - 310 408 - -
Vvi19g1124 742 ProSiteProfiles Response regulatory domain profile. 616 733 IPR001789 GO:0000160
Vvi19g1124 742 SMART HKATPase_4 456 590 IPR003594 -
Vvi19g1124 742 Pfam His Kinase A (phospho-acceptor) domain 345 409 IPR003661 GO:0000155|GO:0007165
Vvi19g1124 742 FunFam Ethylene response sensor 137 309 - -
Vvi19g1124 742 SMART REC_2 615 729 IPR001789 GO:0000160
Vvi19g1124 742 FunFam Ethylene receptor 1 409 591 - -
Vvi19g1124 742 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 398 587 IPR036890 -
Vvi19g1124 742 Pfam Response regulator receiver domain 617 726 IPR001789 GO:0000160
Vvi19g1124 742 SMART gaf_1 159 318 IPR003018 GO:0005515
Vvi19g1124 742 FunFam Ethylene receptor 609 742 - -
Vvi19g1124 742 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 586 IPR003594 -
Vvi19g1124 742 PIRSF Ethylen_sen_hybr_HK 1 740 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vvi19g1124 742 SUPERFAMILY CheY-like 611 734 IPR011006 -
Vvi19g1124 742 SUPERFAMILY GAF domain-like 159 320 - -
Vvi19g1124 742 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 410 IPR036097 GO:0000155|GO:0007165
Vvi19g1124 742 CDD HisKA 343 405 IPR003661 GO:0000155|GO:0007165
Vvi19g1124 742 SMART HisKA_10 344 409 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1124 Vvi-Chr19 17732097 17757298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1124 2 740 Miscellaneous Gene Families AT1G66340 82.838 0.0 1246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi19g1124 GAF 4.7e-14 CL0161