Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1123 ATGGCCTTGCAAATGACTTGGCAGCCGAGTCTCCTCCACCAGAAACGCAAGAATGGTCCTCCTCTAGGGTTGAAGAATCTCGGCAACTCCTGCTATCTCAACAGCGTCCTACAGTGCTTGACATACACACCTCCCCTCGCCAATTTCTGCCTCAATCACCTCCATTCTTCACTCTGCGATTCCGCTGTGGATCGAAAACGCGAGTGCCCCTTCTGCATACTGGAGAAGCGAATTGTTCGGTCTTTGAGCATGGATCTCACCCAGGACGCTCCCTCCAAGATCCAGAGCTGTCTCCGGATATTTGCAGAACACTTTCGATTGGGGCGGCAAGAGGATGCCCACGAGTTCTTGCGCTATGTAATTGACGCCTGTCACAACACTTGCCTTCGTCTCAAAAAGTTGAGGCGCAAGGGGAACAACGATAATGGGCCCTCTACTACTAGTGTGGTCAAGGACATCTTTGGGGGTGCTCTGCAGAGTCAGGTCAAGTGTCTCTCTTGCGGGGCTGAGTCCAACAAGACCGATGAGATTATGGATATAAGCCTTGATGTCTTGCATTTCAATTCTCTTAAACAAGCATTACAAAACTTTTTCCAGCCTGAGGTTTTGGACGGTAACAACAAGTACAAATGTGACAATTGTAAGAAATTGGTGTCAGCAAGGAAGCAAATGTCTATTCTTCAAGCACCCAATGTCCTTGTAATCCAGCTCAAGAGATTTGAGGGCTTATATGGTGGGAAGATTGATAAGCTGATTGCATTTGAAGAAGTTTTGGTGCTCTCGAGCTATATGAACAAAGCAAGCCAGGATTCACATCCCGAGTATAACCTTTTTGCTACTATTGTGCATTCAGGCTACTCACCTGAGTCAGGACACTATTATGCATATATCAAGGATGCAATGGGTCGCTGGTATTGCTGCAACGATTCTTATGTTTCACTTTCAACCCTGCAGGGGGTTTTGTCAGAGAAGGTTTACATTCTTTTCTTTTCTCGTACTAATGCAAGGATCTCACCCCCCAGCAAAGCTTTTGCGTCCCATAATGTGAAGAACCGAGATTGCAATGGCAACAATACATCTAAAAATCCAAGGACAGCTCTTCCAGTGAAAACAAGGCATACAAAACAAAATGTCGAACATTCCTCTGGAATGGATACTTCCACTATATCTAAGGTTGATAAGGTGCCTTCTAGCCTACAGATTAAATCGAATAGCTTTGAAAAAACTGTTTCCAAGAGGGTTCTTGCAACTGGTAATGGAAAACTTGATGTGCATAAGAATCAAATATTGGAAAAGAATGGGGATGTGGTGGAGAAAAGCGAGAAAGGTACGCCATCTTTAGCAAACAGCAATGGTTTTAGTATAAATAAAAGAGTTGATGCTGCTGATAGCGTGAATGGCTTTGTATCTGCAAATGAAAATGATAAACTTCAGAATATTAGTGGTAATTCGGGAAAAGTGGATTTGTATGAGGGTAATGTTGTGAAAAGCAGGATGACAGCAGAAGGAAGGTCTAACTTCCATGAAGTGCATAATGGTGGTGTCAAATGTCCCCCTGGTGTTTCAGGGGTTAAGAGAAAATCACAGGACAAGGGTTCATGCATTTTACTTGCACAAGATGCTCATTCTCTGGCAAAAGTTGAAGAATTCAAAGATGGTCTCAAGAAGGAAGCTTCTTTGGTTCTGAGATCTTGTGGTTGGACGGATAGGCTTTATATTTTCATGCATTCAAGGAAGAGGTTATGCGCTCAAAAATCAGGAGACCCTCCAAGCAGCAATGAATCAAAGAAGTCATTTATTGCTGATGCAAAACAATCTTTCATCTCACAAATTCCTGAGTCACTGAAAGAGAAGCTGATTGAACGTCTAAAATCATTCAGCCAGGAGAAACAAGTTTCAGGTCCTTGA 1908 0.4329 MALQMTWQPSLLHQKRKNGPPLGLKNLGNSCYLNSVLQCLTYTPPLANFCLNHLHSSLCDSAVDRKRECPFCILEKRIVRSLSMDLTQDAPSKIQSCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGNNDNGPSTTSVVKDIFGGALQSQVKCLSCGAESNKTDEIMDISLDVLHFNSLKQALQNFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQAPNVLVIQLKRFEGLYGGKIDKLIAFEEVLVLSSYMNKASQDSHPEYNLFATIVHSGYSPESGHYYAYIKDAMGRWYCCNDSYVSLSTLQGVLSEKVYILFFSRTNARISPPSKAFASHNVKNRDCNGNNTSKNPRTALPVKTRHTKQNVEHSSGMDTSTISKVDKVPSSLQIKSNSFEKTVSKRVLATGNGKLDVHKNQILEKNGDVVEKSEKGTPSLANSNGFSINKRVDAADSVNGFVSANENDKLQNISGNSGKVDLYEGNVVKSRMTAEGRSNFHEVHNGGVKCPPGVSGVKRKSQDKGSCILLAQDAHSLAKVEEFKDGLKKEASLVLRSCGWTDRLYIFMHSRKRLCAQKSGDPPSSNESKKSFIADAKQSFISQIPESLKEKLIERLKSFSQEKQVSGP* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1123 635 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 23 334 - -
Vvi19g1123 635 Gene3D Cysteine proteinases 16 335 - -
Vvi19g1123 635 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 22 333 IPR028889 -
Vvi19g1123 635 FunFam Ubiquitin carboxyl-terminal hydrolase 25 16 335 - -
Vvi19g1123 635 Pfam Ubiquitin carboxyl-terminal hydrolase 23 330 IPR001394 GO:0004843|GO:0016579
Vvi19g1123 635 SUPERFAMILY Cysteine proteinases 17 334 IPR038765 -
Vvi19g1123 635 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 275 293 IPR018200 GO:0004843|GO:0006511
Vvi19g1123 635 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 23 38 IPR018200 GO:0004843|GO:0006511
Vvi19g1123 635 CDD Peptidase_C19E 21 331 - -
Vvi19g1123 635 MobiDBLite consensus disorder prediction 341 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1123 Vvi-Chr19 17668878 17700093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1123 21 338 Miscellaneous Gene Families AT2G24640 39.077 5.57e-60 207