Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1120 ATGGAGATTACAAATGTGACGGAGTATGAGGCTATTGCAAAGCAAAAGTTGCCCAAGATGGTGTTTGACTATTATGCATCAGGTGCAGAGGACCAGTGGACTCTGTATCAGAACAGACATGCTTTTTCACAGATTCTGTTTCGGCCCCGCATTCTTATTGATGTAAGCAAGATAGACATGACCACCACTGTCCTGGGTTTCAAGATTTCAATGCCTATTATGATCGCCCCAACTGCCATGCAGAAAATGGCTCACCCTGAAGGAGAGTATGCAACGGCAAGAGCCGCATCAGCTGCTGGAACAATTATGACCTTATCTTCATGGGCTACTTCAAGCGTGGAAGAGGTTGCTTCAACAGGACCTGGAATCCGCTTTTTTCAGCTCTATGTATATAAGGACAGGCATGTAGTTGCTCAGCTTGTTAGAAGAGCTGAAAGGGCAGGCTTCAAGGCTATTGCCCTTACTGTTGATACCCCTAGGCTGGGGCGCAGAGAGGCTGACATCAAGAACAGATTCACTTTACCCCCATTCCTGACTCTGAAGAACTTTGAAGGCTTGGACCTTGGGAAGATGGATAAAGCTGATGACTCTGGACTTGCTTCATATGTTGCTGGTCAAATTGATCGAACCCTGAGCTGGAAGGATGTGAAGTGGCTTCAGACAATCACCAACTTGCCAATTCTTGTAAAGGGTGTGCTCACAGCTGAGGATACCAGGTTAGCTATACAAGCTGGTGCAGCAGGGATTATTGTATCCAATCATGGAGCTCGCCAACTTGATTATGTCCCTGCCACTATCATGGCTCTGGAAGAGGTTGTCAAAGCTGCACAAGGTCGTGTGCCTGTGTTTTTGGATGGTGGTGTCCGGCGTGGAACAGATGTCTTTAAAGCCTTGGCACTGGGAGCCTCTGGAATATTTATTGGGCGGCCTGTGGTGTTTTCATTGGCCGCAGAAGGAGAGGCTGGTGTTAGAAAAGTACTCCAGATGTTGCGTGAGGAGTTTGAGCTGACCATGGCTTTAAGCGGATGCCGTTCTCTCAAAGAAATCACTCGTGATCACATTGTCACCGAATGGGAAGTTCCTCCCCCTGGCTCTCGCCCCCTACCCCGGTTATAG 1116 0.4821 MEITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWEVPPPGSRPLPRL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1120 371 FunFam peroxisomal (S)-2-hydroxy-acid oxidase GLO1 1 366 - -
Vvi19g1120 371 PANTHER S -2-HYDROXY-ACID OXIDASE-RELATED 2 359 - -
Vvi19g1120 371 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 1 359 IPR037396 -
Vvi19g1120 371 ProSitePatterns FMN-dependent alpha-hydroxy acid dehydrogenases active site. 252 258 IPR008259 GO:0016491
Vvi19g1120 371 CDD alpha_hydroxyacid_oxid_FMN 8 351 IPR012133 GO:0010181|GO:0016491
Vvi19g1120 371 Pfam FMN-dependent dehydrogenase 13 355 IPR000262 GO:0016491
Vvi19g1120 371 Gene3D Aldolase class I 1 366 IPR013785 -
Vvi19g1120 371 PIRSF Al-hdrx_acd_dh 1 359 IPR012133 GO:0010181|GO:0016491
Vvi19g1120 371 SUPERFAMILY FMN-linked oxidoreductases 2 356 - -
Vvi19g1120 371 SMART IMPDH_2 40 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1120 Vvi-Chr19 17510564 17514297 Dispersed