Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1119 ATGGATTCAACTTATGGAAAAAGCAGAGATAGGATAAGCAATCTGCCAGATGCAGTTCTTTGTCACATCATTTCATTTCTTCCCACCAAATTTGCTGTGGGAACTAGTGTCCTCTCAAAAAGATGGAGGTACCTTTGGGCTTCCATCCCTAACCTTGACTTTGATGATGATTTACTGCTGGATCGAGACAAGCCCATTGGGGATTCTGAAAGAAGCATATGCTTTAAGAATTTTGTGGATAAAGTATTGCTTCATGGCAGTATCTCATGTATTAGAAAGTTTCGTCTCAAATGCAGTGACCATGAGTTGGACTCTGCTGTTAATTCCTGGATCTGCACAGCACTTGAGCGTAATGTCCAGGAGCTTGATCTCTATTTTGATACGGAATATCCTATTGAATTGCCTCCTAAATTCTTCTTCTGTAAAACTCTAGTTGTTCTGAAACTGTCTTTTTCAATTTTTCTTGATATTCCAAGTTTGATTTGGTTTCCAAGTCTCAAAGTTCTCCATCTTAGATCAGTTGAATTTTCAACTGATGACTCAGCTCAGAAGCTCTTATCTAGCTGTCCTGTCTTGGAAGAATTGGTTATAGAAAGATGGAGATTGGATGAACAATGGGTTTTTAATGTCTCTGCACCCACATTGAAAAGTTTGGCAATATATTTTTCTGTAGATGGATTAGCATGTATAGCTGAACGAGAAGATGAGCTAGTTGATGAACTAGATAATGAACTATTAGTTGTACCACAAGTTGGACCAGAAGATGAATCAGAAGATGAAGCTGAGGATGAACCAGAAGATCAGAAGTACAAACTTGTGGTTGATGCCCCAAATCTTGAGTACCTTAGTATCACAGATTTTGTTTCAGAGGACTATTTGATGAGCAACCTATCTTCCTTGGTTAAAGCATATGTTAATGTTGGTCCCACTATTAGAGGAATTGATGACCAAATTCTGTATCGTGGCCGTATATATGAGCTCCTTAGAGGGATCTCAAATGTTAAACATCTATCATTATCTGGTGAGACTTTGCATTCTCTCAGTGGTATGTTTTGTGGTTATGAGCTCCCTGCATTTCATAGTGTGACTCGTTTAGAGCTTGAAGTTGATTACGGCTATGGCTTGGAGTTTCTGAAAGAGTTTCTTGACACGTCACCTAATTTAGAAATTCTTATCCTTGAAAATGTTAACAAGGACGAATGTGAAATTGAAGAGTGGACTCTGCCACTTCAAGTGCCTACCTGTGTGGAATTGCACCTCAATGAAGTTGAAATTAAGAAATTTGATGGGTTAGATTATGAGCTTGGAGCAATAGAGTTCCTGCTGAAGAATGCGAGAGTTTTGAAGAAGATGAGCATAGATTGTCGAGATTGGCGTGATGGGCAAGAATTTTGTGTTTGTAAAAAGCTATCAGGGTTTACAAGGGCCTCCATGAGTTGTGAATTTAGTGTTTTTTGCCATTGTGGAGGCATTCGTATGTTTTCTTGA 1488 0.3871 MDSTYGKSRDRISNLPDAVLCHIISFLPTKFAVGTSVLSKRWRYLWASIPNLDFDDDLLLDRDKPIGDSERSICFKNFVDKVLLHGSISCIRKFRLKCSDHELDSAVNSWICTALERNVQELDLYFDTEYPIELPPKFFFCKTLVVLKLSFSIFLDIPSLIWFPSLKVLHLRSVEFSTDDSAQKLLSSCPVLEELVIERWRLDEQWVFNVSAPTLKSLAIYFSVDGLACIAEREDELVDELDNELLVVPQVGPEDESEDEAEDEPEDQKYKLVVDAPNLEYLSITDFVSEDYLMSNLSSLVKAYVNVGPTIRGIDDQILYRGRIYELLRGISNVKHLSLSGETLHSLSGMFCGYELPAFHSVTRLELEVDYGYGLEFLKEFLDTSPNLEILILENVNKDECEIEEWTLPLQVPTCVELHLNEVEIKKFDGLDYELGAIEFLLKNARVLKKMSIDCRDWRDGQEFCVCKKLSGFTRASMSCEFSVFCHCGGIRMFS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1119 495 SMART 9598neu4hmm 414 485 IPR006566 -
Vvi19g1119 495 Pfam FBD 411 453 IPR006566 -
Vvi19g1119 495 Gene3D Ribonuclease Inhibitor 271 488 IPR032675 -
Vvi19g1119 495 SUPERFAMILY F-box domain 8 52 IPR036047 GO:0005515
Vvi19g1119 495 Pfam Leucine Rich Repeat 165 190 IPR013101 -
Vvi19g1119 495 Gene3D - 4 52 - -
Vvi19g1119 495 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 1 478 - -
Vvi19g1119 495 SUPERFAMILY RNI-like 74 396 - -
Vvi19g1119 495 Pfam F-box domain 12 49 IPR001810 GO:0005515
Vvi19g1119 495 CDD F-box_AtFBL13-like 12 47 - -
Vvi19g1119 495 Gene3D Ribonuclease Inhibitor 75 241 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1119 Vvi-Chr19 17498253 17500203 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1119 6 397 EF-hand Containing Proteins AT5G41840 34.719 1.49e-47 171