Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1118 ATGGCTTTCTGGGGAATTGAAGTGAAACCTGGAAAGCCTTTTACTCATTCATTTGATGGCCAGCGTGGGAGGCTTCACATTTCCCAGGCAACATTGGGGATAGGTGCTGCAAGCAAAAAAAGCTTAGTACAGTGTAATGTAGGCAATAAGAGTCCTGTTCTCTTGTGCTGCTTGTTGCCTGATAAGACAGAATCATGCACTTTGAGTTTAGAATTTGAGGAGGTTGAAGAAGTGATCTTCTCTGTTATTGGTCCGCGGAGTGTTCACCTTACTGGTTATTATCTCGGTAATGGCCGGCATTCCAATTTTAATGAGGACTCAGAATCCTATGGAGAAGATATTGCAGATACAGAGACAGAGAAATCTAATGACCATGGTGAAGAAGATGACTATGAGGATAGTTTCATTGATGATGGTGAACTAGAGGTTTTCCCTTCTTCACCAGTTTCCAGTGATGGGGTTTTGCTTGAGGAGAAATTGGATGGTAAAAAAACCAACAACGGGAAGAGCAGCCACCGAAGACTTAAGAAGAAGTACCAGTTGAGTGAATCTGATGATGACATTAGTTTGCAACAAAATATTGCCAAAGGTAGTGCTGGTGTCCTCGTGTTGGAGAGTGATAGTGAAGATAAGATCCCAATTTCCTCCCTATATAAGAGTAAAACCATTGAAAAGAATGCAAAACTTGAAGAAGAAGAAGAAGAAGAAGAAAAGAAAGCTGGAAATGGTATAGGAGGAGAGAGAGGCCACAATAAGCTAGAAGATGGAAAAGGTCACAAGGACACAGAAGAGAAAGAAAATGCAGGCACAGAAAAAGATGGCAATCATTCTATTGGATCAAAAAGAAAAAATAATGCTGTTGGCATAGGTGCTGGGCCTGAAAGGCAATCTGACCTGCCAATTGGTTCTGTCCTGCATTCTACTGAATTGGGCCCTGAAAATGGCAGAAAGTCAAAGAAGAAAAGGAAAGATCGGTCTAAAGGGGTAAAGCATCTGGAGGTTGACAGTGTTAACCATAAAAATGACCTTAAAGAGGATAAAGCCCCACAAAACGAGAATAAGGCTGATAACATGGACCAGAATCTGCCGGAAAGAAAAGAAAATCAGAGGCCTAACAGTTATAAGAGTTGTGACACAAAGGTGGACCAATTAGCTGGTGACAATCAGAGTGATGAGAAAAAGATAAAGAGGAAGAGAAAGAAGAGTAAAACACAGGAGAATGAGGGTGTTGCTAATATGGAAGTACCTCCTTTGTCAATGAACAAAAAGAGTGGATCCCATTTGGAAGTTAAGGACAGGAACTCTGATGCCAATTCATCCCAAGTTAGAATGATGTCCAATGGATTGGTGATTGAGGAGCTAATAACTGGAAAACCAGATGGCAAAATAGCTTGTCAAGGAAAGAAGGTCAGTGTCTATTACACAGGCAAGTTAAAAGATAGTGGACAAATCTTTGACTCAAATATTGGCAGAGCTCCTCTTAAGTTCCGCCTAGGTGCAGGAAAAGTTATAAAGGGATGGGATGTCGGTCTTGATGGTATGCGAGTTGGAGATAAGAGAAGACTCGTAATCCCACCATCAATGGGTTATGGGAATGAAGGAGCTGGTGATAATATTCCACCAAATTCATGGCTAGTATTCGATGTTGAATTGGCTGGTGCCCGGTGA 1668 0.4149 MAFWGIEVKPGKPFTHSFDGQRGRLHISQATLGIGAASKKSLVQCNVGNKSPVLLCCLLPDKTESCTLSLEFEEVEEVIFSVIGPRSVHLTGYYLGNGRHSNFNEDSESYGEDIADTETEKSNDHGEEDDYEDSFIDDGELEVFPSSPVSSDGVLLEEKLDGKKTNNGKSSHRRLKKKYQLSESDDDISLQQNIAKGSAGVLVLESDSEDKIPISSLYKSKTIEKNAKLEEEEEEEEKKAGNGIGGERGHNKLEDGKGHKDTEEKENAGTEKDGNHSIGSKRKNNAVGIGAGPERQSDLPIGSVLHSTELGPENGRKSKKKRKDRSKGVKHLEVDSVNHKNDLKEDKAPQNENKADNMDQNLPERKENQRPNSYKSCDTKVDQLAGDNQSDEKKIKRKRKKSKTQENEGVANMEVPPLSMNKKSGSHLEVKDRNSDANSSQVRMMSNGLVIEELITGKPDGKIACQGKKVSVYYTGKLKDSGQIFDSNIGRAPLKFRLGAGKVIKGWDVGLDGMRVGDKRRLVIPPSMGYGNEGAGDNIPPNSWLVFDVELAGAR* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1118 555 MobiDBLite consensus disorder prediction 101 132 - -
Vvi19g1118 555 MobiDBLite consensus disorder prediction 223 279 - -
Vvi19g1118 555 MobiDBLite consensus disorder prediction 145 185 - -
Vvi19g1118 555 FunFam Peptidyl-prolyl cis-trans isomerase 442 555 - -
Vvi19g1118 555 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vvi19g1118 555 Coils Coil 219 239 - -
Vvi19g1118 555 MobiDBLite consensus disorder prediction 202 441 - -
Vvi19g1118 555 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 467 555 IPR001179 GO:0003755
Vvi19g1118 555 Gene3D Nucleoplasmin core domain 1 99 - -
Vvi19g1118 555 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 551 - -
Vvi19g1118 555 MobiDBLite consensus disorder prediction 328 373 - -
Vvi19g1118 555 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 464 551 IPR001179 GO:0003755
Vvi19g1118 555 SUPERFAMILY FKBP-like 436 552 - -
Vvi19g1118 555 Gene3D - 419 555 IPR046357 GO:0003755
Vvi19g1118 555 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1118 Vvi-Chr19 17459890 17467052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1118 467 555 Calmodulin-binding Proteins AT5G48570 50.000 3.98e-19 89.0