Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1114 ATGGCGAGTCTCTCCAATTCTGTGAAACTCAAGTATATTAAACTTGGCTACCAGTACCTTGTCAACCACATTCTCACCTTCTTTCTCATACCAATTCTCATGGGTTTTCTCATTAAAATCCTCAGTCTGGGTCCTGATCAAATCTATGAAATAGGGAGCTCTCTCCACTTTGATCTCCTTCAATTTCTCGGCTCCTCCTTGATGATCATATTCTTGGCCACCGTCTACTTCATGTCCAAGCCTCGTTCTGTCTACCTAGTCGACTATGCTTGCTTCAAACCCCCAGCCTCATATCGCGTTCCCCATGCTACCCTCGTGAAACACTTGAGGCTCAGCAACAAGGATAATCCTGAGATTGTTGAGTTCCAAAGGCGAATTCTTCAGAGGTCTGGTCTAGGAGATGAGACGTGTTTGGCTCCTGCAAATCTATATATTCCTCCAACACCCAGCTTGGAGGCTTCAAGGGCTGAAGCGGAGCTTATTCTCTTCTCTGTTATTGATGATTTGTTGAAGAAAACCGGGACTAAGACCAAGGACATCGATATTCTTATTGTGAATTGCAGTATAGTTTCACCTACTCCATCACTGTCTGCTATGGTGATTAACAAGTACAAATTGAGGAGTAACATAAAGAGCTTCAATCTTTCTGGTATGGGGTGCAGTGCTAGCCTTATATCAATTGATTTAGCTAGGGAACTTCTTCAGGTTCATCCCAATTCATGTGCTATAGTGGTCAGCACTGAGATCACCACTCCCAATTATTATAGCGGCAACGAGAGATCAATGGTTCTTATAAACTGTTTGTTCCGAATGGGTGGTGCAGCCATCCTTTTGTCCAACAAAAAAGCAGACAGGAGTCGATCCAAGTACCAATTACTCCATCTTGTTAGAACTCACAAGGGAGCTGATGATAAGGCTTACCGGTGTATCCATGAACAAGAAGACACACAAGGGATACAAGGGGTTTCACTCTCTAAAGACCTGATGTTGATTGCTGGGGAGGCCTTGAAGTCCAACATAACCACAATTGGACCCCTTGTGTTGCCTGCTTCCGAGCAGCTCAACTTCCTGTTCACACTCATCGGCCAAAAAATACTGAAACTTAAGTGGAAGCCATACATTCCTGACTTCAAGCAGGCATTTGAGCACTTCTGCATCCATGCGGGCGGGCGAGGGGTGATCGATGAGCTGCAGAAGAAGCTGCAGTTATCGGCTAAGGACGTGGAGGCGTCCAGGATGACGCTGCACCGCTTTGGCAACACTTCATCTTCTTCCATTTGGTATGAGATGAACTATATCGAGAGTAAAGGGAGGATGAAAAAAGGTGACCGGATTTGGCAGATTGCCTTCGGAAGTGGATTCAAGTGTAACAGTGCAGTTTGGAAGTGCAACCGCACAATCACGACGCCAACCGATGGGCCTTGGCTTGACTGCATTGGTAGGTATCCGGTGTCCATCTCACAGGTCCTGGACCTCTGA 1479 0.4598 MASLSNSVKLKYIKLGYQYLVNHILTFFLIPILMGFLIKILSLGPDQIYEIGSSLHFDLLQFLGSSLMIIFLATVYFMSKPRSVYLVDYACFKPPASYRVPHATLVKHLRLSNKDNPEIVEFQRRILQRSGLGDETCLAPANLYIPPTPSLEASRAEAELILFSVIDDLLKKTGTKTKDIDILIVNCSIVSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSASLISIDLARELLQVHPNSCAIVVSTEITTPNYYSGNERSMVLINCLFRMGGAAILLSNKKADRSRSKYQLLHLVRTHKGADDKAYRCIHEQEDTQGIQGVSLSKDLMLIAGEALKSNITTIGPLVLPASEQLNFLFTLIGQKILKLKWKPYIPDFKQAFEHFCIHAGGRGVIDELQKKLQLSAKDVEASRMTLHRFGNTSSSSIWYEMNYIESKGRMKKGDRIWQIAFGSGFKCNSAVWKCNRTITTPTDGPWLDCIGRYPVSISQVLDL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1114 492 PIRSF Very_long_ch_3-ktacl-CoA_syn 3 491 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi19g1114 492 PANTHER 3-KETOACYL-COA SYNTHASE 65 485 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi19g1114 492 FunFam 3-ketoacyl-CoA synthase 94 463 - -
Vvi19g1114 492 Pfam FAE1/Type III polyketide synthase-like protein 76 364 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi19g1114 492 CDD CHS_like 69 461 - -
Vvi19g1114 492 Gene3D - 111 462 IPR016039 GO:0016746
Vvi19g1114 492 SUPERFAMILY Thiolase-like 269 464 IPR016039 GO:0016746
Vvi19g1114 492 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 380 462 IPR013747 -
Vvi19g1114 492 SUPERFAMILY Thiolase-like 68 287 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1114 Vvi-Chr19 17406701 17408179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1114 1 492 Miscellaneous Gene Families AT1G25450 71.748 0.0 766