Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1112 ATGGGTTCAGAGTATGAAGAAAGCAGAGATATAATCAGCAACCTACCAGATGAACTTCTTTGTCATATCCTTTCGTTTCTTCCCACCAAATTTGCTGTGGGAACTAGTATCCTATCAAAAAGATGGAGGTACCTTTGGGCTTCTGTCCCTATTCTTGATTTTGATGATGAGTTATGGCTGAATCCAAGTACGCTTGTTGAACTTGAAGAAAGAATAATTATGTTTCAGAATTTTGTGGATGGAGTATTGCGTCATAGCGAGGTCTCATGTATTAAAAAGTTCCGACTCGGTTACCGTGATAACAATCTGGACAGTGTTTATTCCTGGATCTGCATTGCACTTGAGCGCCGCGTTCAAGAGCTTGATCTCCACTTACTTATAGACTGGGGGGTTGAATTGCCACCTATGTTTTTCATTTGCAAAACATTAGTGGTTGTGAAACTGTCGTGTGCACTTTTTCTTGATATTCCAACTACAGTTTGGCTTCCAAGTCTCAAGGCTCTCCATCTTAAGTCAGTTGAATATTCAGATGATGACTCAATCCAGAAGCTTCTATCTGGCTGCCCAGTTCTGGAAGAACTAGTCATAGAGAGAGAAGAACGGGATAATCAGTGGGTTGTTAATGTTTCCAATCCCTCATTGAAAATTTTGCGCATATTTTTTTTCACAGATGGATTTGCACACCCATATGAACAAGAAGATCAGGACTATAAAGTTGTGGTTGATGCCCCAAATCTTGAATACCTTAGTATCACAGATTACTTGTCAAAGGACTATTTTGTGAAAGATTTACCTTCCTTGGTTAAAGCATTTATTGATGTTGAACAAGATAGTGAAGAATTTGAAGAAAGTCCACATAATGGTGGCATATCATATCATGGTCCTATTTATGAGCTTCTTGGAAGGATCTCAAATGTGAAGTGTCTATCACTAACTGGCGTAACTTTAGATGTAAGTTTCCTATGTCCACCCATTCTCCCTACATTTCATAATATGACCTGCTTGGAGTTCTTGTTTATTGGCGGCTTCAACTGGGACTTCTTGCCCAACTTTCTTCATAGCTCACCTAATCTTGAAGCTCTTGTCATTGAAACTGTATGTAAATATCCAATGTAA 1116 0.3889 MGSEYEESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELEERIIMFQNFVDGVLRHSEVSCIKKFRLGYRDNNLDSVYSWICIALERRVQELDLHLLIDWGVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQKLLSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGRISNVKCLSLTGVTLDVSFLCPPILPTFHNMTCLEFLFIGGFNWDFLPNFLHSSPNLEALVIETVCKYPM* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1112 371 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 10 369 - -
Vvi19g1112 371 Gene3D - 3 60 - -
Vvi19g1112 371 Gene3D Ribonuclease Inhibitor 158 369 IPR032675 -
Vvi19g1112 371 ProSiteProfiles F-box domain profile. 9 62 IPR001810 GO:0005515
Vvi19g1112 371 SMART fbox_2 15 55 IPR001810 GO:0005515
Vvi19g1112 371 SUPERFAMILY RNI-like 77 364 - -
Vvi19g1112 371 CDD F-box_AtFBL13-like 12 47 - -
Vvi19g1112 371 Pfam Leucine Rich Repeat 164 189 IPR013101 -
Vvi19g1112 371 SUPERFAMILY F-box domain 8 59 IPR036047 GO:0005515
Vvi19g1112 371 Pfam F-box domain 12 49 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1112 Vvi-Chr19 17282803 17284294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1112 8 364 EF-hand Containing Proteins AT5G41840 35.509 5.24e-46 163