Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1109 ATGGCCAACAGTGACCAAATAGTTCTGTTAGATTTCTTTCCAAGCGTTTTTGGGATTAGGGTAAGACTTGCCTTGGCAGCCAAGGGGATCGAGTATGACGGAAAGGAAGAAGACTTGATTGGAGGTAAAAGCTCTCTGCTCTTGAAGATGAATCCAGTTCATAAAAAGATTCCCGTTTTGATTCACAACGGTAAGCCCATATGCGAGTCCTTGATAATAGTTGAATACATAGATGAGGTTTGGAAGGATAGATGTCCTCTGCTGCCATCTGATCCTTACCAAAAAGCAAAAGCAAAGTTCTGGGCTGACTTCATAGACAAAATGGTTTACCCATGCAGTAAGAAGCTGTGGACAGCCAAAGGAGAAGAGCAGGAGGCTAGCAAGAAGGAATTCCTAGATAGGATTAAACTATTGGAAGGAGAGCTTAAATCCTATCCTTACTTTGGTGGTGAGAGCTTGGGGTTTCTGGACATTGCTTTTCTCCCATTGTACTCCAGGTTCTACACATTTGAGGCTTTTGGGAACTTCAGCATAGAGGCCGAGTGTCCCAAATTGGTGGCATGGGGTAAGAGGTGTATGGAGGAGGAGTTCGTGTCCAGATCTCTTCCTCACCAACATAAGATCTATGATTTGGTGGTGGAGTTCACGAAGAACGTTGGGATATAG 666 0.4414 MANSDQIVLLDFFPSVFGIRVRLALAAKGIEYDGKEEDLIGGKSSLLLKMNPVHKKIPVLIHNGKPICESLIIVEYIDEVWKDRCPLLPSDPYQKAKAKFWADFIDKMVYPCSKKLWTAKGEEQEASKKEFLDRIKLLEGELKSYPYFGGESLGFLDIAFLPLYSRFYTFEAFGNFSIEAECPKLVAWGKRCMEEEFVSRSLPHQHKIYDLVVEFTKNVGI* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1109 221 FunFam Tau class glutathione S-transferase 1 90 - -
Vvi19g1109 221 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
Vvi19g1109 221 FunFam Glutathione S-transferase U20 91 221 - -
Vvi19g1109 221 SFLD Glutathione Transferase (cytosolic) 3 218 IPR040079 -
Vvi19g1109 221 SFLD Main.3: Omega- and Tau-like 3 218 IPR045073 -
Vvi19g1109 221 CDD GST_N_Tau 7 81 - -
Vvi19g1109 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 12 209 IPR045073 -
Vvi19g1109 221 Gene3D - 91 221 - -
Vvi19g1109 221 Gene3D Glutaredoxin 3 90 - -
Vvi19g1109 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 85 IPR004045 -
Vvi19g1109 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 215 IPR010987 -
Vvi19g1109 221 CDD GST_C_Tau 92 215 IPR045074 GO:0004364|GO:0006749
Vvi19g1109 221 Pfam Glutathione S-transferase, C-terminal domain 119 195 IPR004046 -
Vvi19g1109 221 SUPERFAMILY Thioredoxin-like 6 110 IPR036249 -
Vvi19g1109 221 SUPERFAMILY GST C-terminal domain-like 79 217 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1109 Vvi-Chr19 17210328 17211134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1109 4 221 Glutathione S-transferase Gene Family AT1G17180 60.550 1.69e-97 281