Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1107 ATGGAATTTGTGACTGCAGTACTGGGTACTTTAATTGCGGATGCTTGTCCACGTCTCTGTGGCTATGTTTATTCTAAAATTCGGAATTCATTCAGATTTCAGTTGAATTTCAATGATCTCGAAAGCCATATGAATCTTCTAACAGAATTAAGGTCGCAGGTGGAAACGGAACTTGATGAATCGGTTTGGACCACCCAAGTACGAGGGTGGCTTCTAGAGGTTCAAGGGATTGAGGGGGAGGTGAACTCCATGAATGGAAGCATAGCAGCCAGAAACCAAAACTGTTGTGGAGGCATCTTAAATCGTTGTATGCGTGGTGGGGAACTGGCAGAAAGGCTCAAGAAGGTTCAGAGAATTCACAGCGTGGGTATGAGCATGGTGGCTGCAAATCGTCGTGAAAGACCAGCGGAGCATATCCCAGATCTAATGACTGAAGATCAGACCACAGAAGTGGAGCATATTCCAGGACCATCAGTTGAAGATCAAGCAACAGCAGTGGGGCATATCCTGCGTCCATCCATAGAATATCAAACAACAGCAGTGGAGCACATTCCTGCGCCATCAATTGAAGATCAAACAACAGCATCGCTCATTTTAGCGAAACTTATGAATCTGCTGAATGATGATGAAGTAGGGAGGATTGGAGTTTGGGGTATGGGGGGAGTGGGAAAAACAACCCTGGTAAAGAACTTGAACAACAAGCTTAGGAATGATTCTTCAACACGACCTTTTGGCATTGTTATATGGATTACGGTGTCCAAGCAGTTGGACTTAGCGAGGATCCAAACACAAATAGCTCAGAGAGTGAATATGGGAGTGAATATGAATGAAAGCACTGAGAGTGTGGCTAGTAAATTGCATCAGAGGCTGGAGCAGCAAAACAAGTTTCTGCTTATTCTTGACGATGTTTGGGAGGAAATTGCTTTGGATGCTTTAGGTGTCCCAAGGCCTGAAGTTCATGGGGGATGTAAGATCATATTGACGACTAGATTTTTTGATGTTTGTCGGGATATGAAGACAGATGCAGTATTGAAAATGGATGTCCTAAATGATGTAGAGGCATGGGAATTGTTTTGTCAAAATGCAGGCACGGTAGCCACCTTAGAACATATTAAACCTTTAGCCAAGGAAGTTGCCAGAGAATGTGGTGGTTTGCCTTTGGCAATAATCGTCATGGGGACATCTATGAGGGAAAAGAAAATGGTTGAACTCTGGAAGGATGCCTTAAGCGAGCTGCAAAACTCGGTGCCCTATAATATCAAAGGAATCGAGGATAAGGTTTATAAGCCCTTGAAGTGGAGTTACGACTCATTAGGTAATAATATCAAATCTTGCTTCCTGTATTGCTCTCTATATCCTGAGGATTTCTCTATTGAAATAAGAGAACTTGTACAATGCTGGCTGGCCGAAGGTCTCATAGATAAACAAAAGAACTACGATGATATACACAATAGGGGAGCTGCTGTAGTTGAATATTTGAAAGACTGTTGTTTGTTGGAAGATGGTCACCTTAAGGATACAGTGAAAATGCATGATGTAATTCGGGATGTGGCAATATGGATTGCAACATCCGTGGAGGTTAAATATAAATCCCTTGTTCGATCAGGAATTAGTTTGAGCCAGATTTCAGAGGGTGAATTGTCAAGGTCTGTCAGGAGAGTATCTTTCATGTTTAATAGAATAAAAGAGCTACCTGATGGTGTTCCACTGTGTTCAAAGGCATCAACATTGCTTCTACAAGACAATCTCTTTCTTCAGAGAGTTCCCCAAGGATTCCTGATAGCATTTCAAGCGCTCAAGGTCTTGAATATGGGTGGAACCCAGATCTGCAGATTGCCTGACTCCATTTGCTTACTTCATCAACTTGAGGCTCTTCTTTTACGGGACTGTTCTCATCTTCAAGAAATACCTCCACTAGATGGGCTTCAAAAACTACTAGTGCTTGATTGTTGTGCCACTCGCGTCAAGGAATTGCCAAAAGGGATGGAGCGATTGAGTAACTTAAAGGAATTAAACCTATCATGCACGCAGTACCTGGAAACTGTACAAGCTGGAGTAATGTCAGAGTTGTCCGGTTTAGAAGTTCTAGACATGACAGATAGTAGTTACAAATGGAGCTTGAAAAGAAGGGCTGAAAAGGGAAAAGCAGTGTTTGAGGAGCTAGGATGCCTAGAGAAGTTAATTTCTGTATCAATTGGTCTGAACGACATCCCATTTCCGGTCAAGAAGCATACCTGGATACAAAAATTGAAACGCTCCCAATTTCTTATGGGCCCAACTGATTGCGAAATTGATAAAACAACCAAATTCAACGAAAGGCAGGTGATCTTCATTAGTCTTAATTATCTCTCAAAAGAATGGGATATTCTGTGGTGGTTAACCAATGCAACTTCTCTAGCTTTGATTTCTTGCAGTGGACTAGATAAAATGGTGGAAACCTTAGCAATGAAAAGCGTTCATTGCTTTGGTTGCTTGAAATCACTTACTATCAGCCACGCTCAAATCACCTTTGGGCCGGAAGAAGCATGGGGTGCCCGAAATGACCTACTGCCAAATATGGAGGAGCTTAAACTTAAGTATGTCCTTGGACTAAAGAGCATCTCAGAGTTGGTTGCTCGTCTTGGACTCAAACTCTCAAAACTTAGAGTACTTAAGGTGTTTGATTGCTACAGTTTGGATTATCTTTTCTCCTGCATTGATTTTTCTCAAACTCCAAACCTTGAAAACCTGGAAGAGATCGGATTAAGTTGCTTATACCTGGATGATCTATTTGTATACGGTTCAAGACAGACCTCAGTTCCAAGTCCAGTTGCTCCAAACTTGCGGAGAATATACCTGGATGGTGTCGAAAATCTGAAGACTTTGGGCAGGCCAAAAGAGCTATGGCAGAATCTGGAGACTTTTCTAGCCTCGGAATGTAAAAGTTTGAAGAAGCTACCTCTCAATAGCCAAAGTGCAAATACCCTAAAAGAAATAAAAGGAGAATTGTGGTGGTGGAATCAATTGGAGTGGGATGATGATGATACCCGGTCCAGCCTCCAGCCTTTTTTCAATGAGCGGGGTGCACCCTAA 3072 0.4232 MEFVTAVLGTLIADACPRLCGYVYSKIRNSFRFQLNFNDLESHMNLLTELRSQVETELDESVWTTQVRGWLLEVQGIEGEVNSMNGSIAARNQNCCGGILNRCMRGGELAERLKKVQRIHSVGMSMVAANRRERPAEHIPDLMTEDQTTEVEHIPGPSVEDQATAVGHILRPSIEYQTTAVEHIPAPSIEDQTTASLILAKLMNLLNDDEVGRIGVWGMGGVGKTTLVKNLNNKLRNDSSTRPFGIVIWITVSKQLDLARIQTQIAQRVNMGVNMNESTESVASKLHQRLEQQNKFLLILDDVWEEIALDALGVPRPEVHGGCKIILTTRFFDVCRDMKTDAVLKMDVLNDVEAWELFCQNAGTVATLEHIKPLAKEVARECGGLPLAIIVMGTSMREKKMVELWKDALSELQNSVPYNIKGIEDKVYKPLKWSYDSLGNNIKSCFLYCSLYPEDFSIEIRELVQCWLAEGLIDKQKNYDDIHNRGAAVVEYLKDCCLLEDGHLKDTVKMHDVIRDVAIWIATSVEVKYKSLVRSGISLSQISEGELSRSVRRVSFMFNRIKELPDGVPLCSKASTLLLQDNLFLQRVPQGFLIAFQALKVLNMGGTQICRLPDSICLLHQLEALLLRDCSHLQEIPPLDGLQKLLVLDCCATRVKELPKGMERLSNLKELNLSCTQYLETVQAGVMSELSGLEVLDMTDSSYKWSLKRRAEKGKAVFEELGCLEKLISVSIGLNDIPFPVKKHTWIQKLKRSQFLMGPTDCEIDKTTKFNERQVIFISLNYLSKEWDILWWLTNATSLALISCSGLDKMVETLAMKSVHCFGCLKSLTISHAQITFGPEEAWGARNDLLPNMEELKLKYVLGLKSISELVARLGLKLSKLRVLKVFDCYSLDYLFSCIDFSQTPNLENLEEIGLSCLYLDDLFVYGSRQTSVPSPVAPNLRRIYLDGVENLKTLGRPKELWQNLETFLASECKSLKKLPLNSQSANTLKEIKGELWWWNQLEWDDDDTRSSLQPFFNERGAP* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1107 1023 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 38 980 - -
Vvi19g1107 1023 SUPERFAMILY L domain-like 506 892 - -
Vvi19g1107 1023 Gene3D - 348 434 IPR042197 -
Vvi19g1107 1023 PRINTS Disease resistance protein signature 213 228 - -
Vvi19g1107 1023 PRINTS Disease resistance protein signature 382 396 - -
Vvi19g1107 1023 PRINTS Disease resistance protein signature 290 304 - -
Vvi19g1107 1023 PRINTS Disease resistance protein signature 663 679 - -
Vvi19g1107 1023 Gene3D - 435 519 IPR036388 -
Vvi19g1107 1023 Gene3D Ribonuclease Inhibitor 528 757 IPR032675 -
Vvi19g1107 1023 FunFam Probable disease resistance protein At1g61300 177 343 - -
Vvi19g1107 1023 Coils Coil 40 60 - -
Vvi19g1107 1023 FunFam Probable disease resistance protein At1g63360 435 520 - -
Vvi19g1107 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 449 IPR027417 -
Vvi19g1107 1023 FunFam Probable disease resistance protein At5g66910 348 434 - -
Vvi19g1107 1023 Pfam NB-ARC domain 202 436 IPR002182 GO:0043531
Vvi19g1107 1023 Gene3D Ribonuclease Inhibitor 765 997 IPR032675 -
Vvi19g1107 1023 Gene3D - 176 344 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1107 Vvi-Chr19 17116246 17119317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1107 214 680 WRKY Transcription Factor Family AT5G45050 22.059 1.56e-08 57.0