Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1104 ATGAGTGATGCTATGCTGCCTGCTTATGATAGAGAGCTTTACCAATGTAAGCTATTGCGCCAATGGGGAAGAGGGCCCTTGATATTATTGGATGTTGAGTCATTAGGTAGGAATTGTGGCACATCTTGTACTGTATATGGAATGCATTATGATGGGATTGTTTATGAAGCTGTTGTCACATGGAATACACTCATAGATTGTCATTGTAAGTCTGGGCACCACAATAAAGCAGAGGAGTTGTTTGAGGCAATGCAGAATAGTGGTTGCTCTCCTTTCACTACAACATATGATATTATGATTAATTCTTCTGGGGAGCAGGAGAGATGGGAGGATGTGAAGACTTTGTTGGGGAAGATGCAGATTTCTTGGGATGGCTGCCACTCATGCACATGGGGACTCCACTCTCACGCACAGCCATGGACGACCTCACCTAGGAGATCTCCATGTTGCAACATGGCTCCAGAAAAGGACCCATTTTCCATGAGCTGCAACTTCAAAGAAGGCATACATAGCCTGGATTCTTATATAAATCTCCGACAACGTGCAGCATATAAAGCATCAGATTGGAAGGATTAA 576 0.4358 MSDAMLPAYDRELYQCKLLRQWGRGPLILLDVESLGRNCGTSCTVYGMHYDGIVYEAVVTWNTLIDCHCKSGHHNKAEELFEAMQNSGCSPFTTTYDIMINSSGEQERWEDVKTLLGKMQISWDGCHSCTWGLHSHAQPWTTSPRRSPCCNMAPEKDPFSMSCNFKEGIHSLDSYINLRQRAAYKASDWKD* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1104 191 NCBIfam pentatricopeptide repeat 59 91 IPR002885 -
Vvi19g1104 191 Gene3D Tetratricopeptide repeat domain 44 156 IPR011990 GO:0005515
Vvi19g1104 191 Pfam PPR repeat family 58 102 IPR002885 -
Vvi19g1104 191 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 91 IPR002885 -
Vvi19g1104 191 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 48 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1104 Vvi-Chr19 17070455 17071030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1104 59 116 Glycosyltransferase AT1G05670 36.207 4.58e-07 47.4