Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1082 ATGGACTTTTCACTTTCGAATCAAGGTCCATGTATAAACACATTAGGCCTAGAGCTGTTGAGGGGGATTTATGATGAGATGAAGTTTGAGAGGCCTAGTAAAATTGGGGCAATCAGTTTGCCTATGATTTTGACTCCTCCTTACAAAAATGTAATTGCTCAAGCTAACAATGGTTTTGCCAAGACGACTTGTTTTGTACTTGGAATGTTGACTCGTGTTGATCCAAAGTTGCAAGTCCCTCAGGCCCTTTGCATTTGTCCTACAACAAAATTGGCAATATAG 282 0.4007 MDFSLSNQGPCINTLGLELLRGIYDEMKFERPSKIGAISLPMILTPPYKNVIAQANNGFAKTTCFVLGMLTRVDPKLQVPQALCICPTTKLAI* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1082 93 PANTHER RNA HELICASE 16 92 - -
Vvi19g1082 93 Pfam DEAD/DEAH box helicase 35 92 IPR011545 GO:0003676|GO:0005524
Vvi19g1082 93 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 92 IPR027417 -
Vvi19g1082 93 Gene3D - 12 93 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1082 Vvi-Chr19 16450467 16451676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1082 13 92 Eukaryotic Initiation Factors Gene Family AT3G19760 39.024 2.86e-08 47.8