Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1081 ATGCATCTTGAAGATATTGTCATGAATAATGTTGGCAATCCCATAATCATAGATCAAAAGTATTGCCCCCATAACCAATGCAACTTAAAGCGTCTATCACGCATTAAGCTCAGCAATGTTAGCTTCAGAAACATCCAGGGCACTACCTCAACTCAGGTTCCTGTCAAGCTTGTTTGCAGCCAAGGAGTACCATGCCAAGATTTCGAGCTTGGTGACAACAACGGAAATGAAGGCCTTGCCATGTCACAATGCAAGAACATTAAGCCAAATCTACTGGACAAGCAACTGCCAAGGACTTGTGCCTAA 306 0.4314 MHLEDIVMNNVGNPIIIDQKYCPHNQCNLKRLSRIKLSNVSFRNIQGTTSTQVPVKLVCSQGVPCQDFELGDNNGNEGLAMSQCKNIKPNLLDKQLPRTCA* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1081 101 Pfam Glycosyl hydrolases family 28 2 88 IPR000743 GO:0004650|GO:0005975
Vvi19g1081 101 Gene3D - 1 98 IPR012334 -
Vvi19g1081 101 SUPERFAMILY Pectin lyase-like 2 100 IPR011050 -
Vvi19g1081 101 PANTHER - 2 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1081 Vvi-Chr19 16414326 16414732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1081 1 101 Glycoside Hydrolase AT3G07820 49.524 1.45e-33 117