Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1080 ATGGCTTACCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAACTTGGGGTCCTCGGCGTTTCAAGAAATTGGATCCATGTATGGTGTTCCAAAGGAGATAACCAAGCTCAATGGGAAACTGGGCACCATCAAGGCTGTGCTTTTGGATGCTGAGGAGAAGCAGCAGCAGCAGAGCAATCGTGCAGTCAAAGATTGGGTCCGGAGGCTCAGGGGTGTTGTTTATGACGCAGATGACTTGCTGGATGACTATGCAACCCATTATCTTCAGCGAGGAGGATTGGCAAGGCAGGTCAGTGACTTCTTCTCATCTGAAAATCAAGTTGCTTTTCGTTTTAAGATGAGTCATAGACTCGAGGATATCAAAGAAAGGCTAGATGATGTTGCAAACGACATCCCCATGTTAAATCTCATTCCACGGGACATAGTACTAAACACAGGGGAAGAGAATAGTTGGAGAGAAACCCACTCATTCTCGTTGCCGTCTGAAATTGTGGGAAGAGAAGAAAACAAAGAGGAGATAATAAGGAAGCTGTCATCTAACAATGAAGAAATTCTTTCCGTTGTTGCCATTGTTGGCTTTGGGGGATTGGGTAAGACCACCCTCACTCAGTTGGTATACAATGACGAAAGAGTAAAACATTTCGAGCATAAGACATGGGTTTGCATTTCTGATGATTCTGGTGATGGTCTTGACGTCAAACTGTGGGTCAAAAAGATTTTAAAATCTATGGGAGTTCAGGGTGTGGAGAGTATGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAGAATCCTGGAAAATGGTATGAAGTGAAAAAATTGTTGATGGTTGGTGCTAAAGGTAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTATGGAAGATAAGTCTCCCGTTGGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGCTTTATTTTCAAAATTTGCATTTACAGAACAGGAGATTTTGAAGCCAGAAATTGTGAAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCGTTATTAAGTCTTTAGCAATGATATTGCAGTCTAAAAGAGAACCGGGGCAGTGGTTGTCTATTAGAAACAATAAAAATTTGCTGTCACTTGGAGATGAAAATGAGAATGTTCTAGGGGTGCTGAAATTAAGTTATGATAATTTGTCAACTCATTTGAGACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTATGAGATTGAGAAAAAGTTGGTGGTACAACTATGGATAGCACAAGGTTATATTCAATCTTCAAATGATAATAATGAGCAATTAGAGGATATAGGGGATCGATATTTTGAGGAATTATTGTCAAGGTCATTGTTGGAGAAGGCGGAAAACGATCATTTTACTAATACATTAAGGTATAAAATGCATGACCTTATACATGATCTTGCACAATCAATTATAGGATCTGAGGTCCTCGTTTTAAGAAATGATGTAGAAAACATTTCAAAAGAAGTTCGTCATGTACTTCCGAATGCTATTACAAGGTTAAAGAATTTGCAAACACTGAAACTCAAAGTGTGTCCGAATTTGAAAAAACTTCCAAAAAATATAAGGCAACTTATCAATCTTAGACACTTGGAGAATGAGAGATGGAGCAACTTGACTCATATGCCACGTGGAATAGGAAAGTTGACTTTACTTCAAAGTCTACCATTGTTTGTTGTTGGGAATGAGACAGGGTGGTTAAGGAATCACAAAATTGGTAGCTTGATTGAGTTGGAAAGCCTCAACCATCTAAGAGGAGGGTTATGCATAAGTAATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGAGAAATTTTGAAAGGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGAATCGGTCGGGCCAAGATGGGGGGGATGAGGGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCCACACCTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATAGGTTGGGTTCCCTGCTTCCCGACTTAATTAAAATTGAAATTTCGGGATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTCAACTTCCTTCTCTCAAGTCTTTGAAGCTTGATGATATGAAAGAAGTGATGGAGTTAAAGGAGGGTTCATTAGCAACGCCACTCTTCCCTTCTCTTGAATCGCTCGAACTCTCTGGCATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAAGGTCCTTCATTTGCTCATCTTTCAAAGTTACATATTCATAAATGCTCTGGTTTGGCATCACTGCATTCTTCTCCTTCTCTTTCTCAATTAGAGATCAGAAATTGCCATAACTTGGCATCCTTGGAACTGCCGCCGTCCCGTTGTCTTTCTAAATTAAAGATCATAAAATGCCCTAACTTGGCATCCTTCAATGTGGCTTCATTACCTCGTCTTGAGGAACTAAGCCTGTGTGGAGTCAGAGCAGAGGTACTGAGGCAGTTAATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTTTGCATATACGGAAGATTGATGGTATGATATCTCTCCCAGAGGAGCCGCTTCAATGTGTTTCCACTCTCGAAACTCTCTACATTGTTGAGTGCTTTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGAAACTTATTATTTATTACTGCTCTGAATTGACATCACTGCCAGAAGAGATCTATTCCCTTAAAAAATTGCAGACATTTTATTTCTGTGATTATCCACACCTAGAGGAAAGATACAAGAAGGAAACAGGCGAAGACCGGGCCAAGATTGTTCATATCCCACATGTTCGTTTCAACAGTGATTCCTATATGGAATTGGAGATATTCCTAAAGACCAAAAACTTTCAAAGCCGCCCAAGATCCCATAGGTTGAATTTGGATTCACCCAATTTACAATCCACTAATTCTACTTATGTCATCTTTGTTATGTTACAATTCACCTTTACTTGTTATGCAACCTGCCTTAATAATTTGGGGAGACCAAGATATGACATTCCTAGTAGAACCAACTTACAAATTGAAAAGGCATTTTGGGTGAGGAGGCCCAACTTGTGA 3210 0.3988 MAYQIPFGVVEHILTNLGSSAFQEIGSMYGVPKEITKLNGKLGTIKAVLLDAEEKQQQQSNRAVKDWVRRLRGVVYDADDLLDDYATHYLQRGGLARQVSDFFSSENQVAFRFKMSHRLEDIKERLDDVANDIPMLNLIPRDIVLNTGEENSWRETHSFSLPSEIVGREENKEEIIRKLSSNNEEILSVVAIVGFGGLGKTTLTQLVYNDERVKHFEHKTWVCISDDSGDGLDVKLWVKKILKSMGVQGVESMTLDGLKDKLHEKISQKKYLLVLDDVWNENPGKWYEVKKLLMVGAKGSKIIVTTRKLNVASIMEDKSPVGLKGLGEKESWALFSKFAFTEQEILKPEIVKIGEEIAKMCKGVPLVIKSLAMILQSKREPGQWLSIRNNKNLLSLGDENENVLGVLKLSYDNLSTHLRQCFTYCALFPKDYEIEKKLVVQLWIAQGYIQSSNDNNEQLEDIGDRYFEELLSRSLLEKAENDHFTNTLRYKMHDLIHDLAQSIIGSEVLVLRNDVENISKEVRHVLPNAITRLKNLQTLKLKVCPNLKKLPKNIRQLINLRHLENERWSNLTHMPRGIGKLTLLQSLPLFVVGNETGWLRNHKIGSLIELESLNHLRGGLCISNLQNVRDVELVSRGEILKGKQYLQSLRLEWNRSGQDGGDEGDKSVMEGLQPHPHLKDIFIEGYGGTEFPSWMMNDRLGSLLPDLIKIEISGCSRCKILPPFSQLPSLKSLKLDDMKEVMELKEGSLATPLFPSLESLELSGMPKLKELWRMDLLAEEGPSFAHLSKLHIHKCSGLASLHSSPSLSQLEIRNCHNLASLELPPSRCLSKLKIIKCPNLASFNVASLPRLEELSLCGVRAEVLRQLMFVSASSSLKSLHIRKIDGMISLPEEPLQCVSTLETLYIVECFGLATLLHWMGSLSSLTKLIIYYCSELTSLPEEIYSLKKLQTFYFCDYPHLEERYKKETGEDRAKIVHIPHVRFNSDSYMELEIFLKTKNFQSRPRSHRLNLDSPNLQSTNSTYVIFVMLQFTFTCYATCLNNLGRPRYDIPSRTNLQIEKAFWVRRPNL* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1080 1069 SUPERFAMILY L domain-like 480 882 - -
Vvi19g1080 1069 Pfam Rx N-terminal domain 9 104 IPR041118 -
Vvi19g1080 1069 Gene3D Ribonuclease Inhibitor 841 1024 IPR032675 -
Vvi19g1080 1069 Pfam NB-ARC domain 168 413 IPR002182 GO:0043531
Vvi19g1080 1069 Gene3D - 325 410 IPR042197 -
Vvi19g1080 1069 Gene3D Ribonuclease Inhibitor 500 840 IPR032675 -
Vvi19g1080 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 425 IPR027417 -
Vvi19g1080 1069 Gene3D - 150 321 IPR027417 -
Vvi19g1080 1069 PRINTS Disease resistance protein signature 189 204 - -
Vvi19g1080 1069 PRINTS Disease resistance protein signature 265 279 - -
Vvi19g1080 1069 PRINTS Disease resistance protein signature 361 375 - -
Vvi19g1080 1069 PRINTS Disease resistance protein signature 531 547 - -
Vvi19g1080 1069 Gene3D - 9 120 - -
Vvi19g1080 1069 Gene3D - 411 499 IPR036388 -
Vvi19g1080 1069 SUPERFAMILY L domain-like 846 1027 - -
Vvi19g1080 1069 FunFam Probable disease resistance protein At1g63360 411 502 - -
Vvi19g1080 1069 PANTHER DISEASE RESISTANCE PROTEIN RP 61 795 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1080 Vvi-Chr19 16401287 16406704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1080 187 508 WRKY Transcription Factor Family AT5G45050 24.189 2.44e-09 59.7