Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1078 ATGGCTGCCGGTGCTGAGATGTCTGGTGAGGCAGTGCCCGCCGTTCCATCTTCCAAGAATTCCGATTCGAAATCGGAATTCGGAGCAGGAATGCAATCGATGATCGTTGATATGTTGTCCAATTTAAAGTTAAATCCATTGGCCAAGGAGTTTTTCCCTTCATCATACTCTCATGATCATTTGATTCCTACTGATTTTTCTAAGGATTCCCCCAATGATGCCTACCCAAATAATCGCAGGAGAAGAAATAATTATAACCAAGGAAGGAGGAGGTTGAGTGGGAGAGCATTTAGAGCTCAACGTGAAGATAGTATTCGCCGCACTGTGTATGTTTCTGATATTGATCAGCATGTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAAGTTGTTGATTGTCGAGTTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCATTTGTGGAGTTTGCTGATGAGCATGGTGCGAGAGCAGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGTCAGAGGATGAGCGGGAAATGTGTGCTAGGACTGTCTATTGTACAAATATTGATAAGAAGGTTTCTCAGGCTGAGGTCAAGAACTTCTTTGAAAGGGCCTGTGGTGAGGTTTCTCGCCTGAGGCTTTTAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAGGGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTTGCATTAG 879 0.463 MAAGAEMSGEAVPAVPSSKNSDSKSEFGAGMQSMIVDMLSNLKLNPLAKEFFPSSYSHDHLIPTDFSKDSPNDAYPNNRRRRNNYNQGRRRLSGRAFRAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKKVSQAEVKNFFERACGEVSRLRLLGDHVHSTRIAFVEFAMAESAIVALNCSGLVLGTQPIRVSPSKTPVRPRVPRATLH* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1078 292 CDD RRM1_CID8_like 105 184 IPR034823 -
Vvi19g1078 292 SMART rrm1_1 205 276 IPR000504 GO:0003723
Vvi19g1078 292 SMART rrm1_1 108 178 IPR000504 GO:0003723
Vvi19g1078 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 273 IPR000504 GO:0003723
Vvi19g1078 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 171 IPR000504 GO:0003723
Vvi19g1078 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 280 IPR000504 GO:0003723
Vvi19g1078 292 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 38 285 - -
Vvi19g1078 292 SUPERFAMILY RNA-binding domain, RBD 195 285 IPR035979 GO:0003676
Vvi19g1078 292 SUPERFAMILY RNA-binding domain, RBD 72 183 IPR035979 GO:0003676
Vvi19g1078 292 CDD RRM2_CID8_like 200 281 IPR034825 -
Vvi19g1078 292 Gene3D - 192 285 IPR012677 -
Vvi19g1078 292 Gene3D - 63 183 IPR012677 -
Vvi19g1078 292 FunFam Polyadenylate-binding protein-interacting protein 10 198 276 - -
Vvi19g1078 292 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g1078 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 182 IPR000504 GO:0003723
Vvi19g1078 292 MobiDBLite consensus disorder prediction 62 97 - -
Vvi19g1078 292 FunFam Polyadenylate-binding protein-interacting protein 11 72 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1078 Vvi-Chr19 16296214 16309991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1078 91 275 Eukaryotic Initiation Factors Gene Family AT1G34140 25.510 4.15e-12 64.3