Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1073 ATGGGCATCAAGATGCTTCCATTCGATGACCTCACTGGAATAAGAGAAAGAGATGTTAATATGAGTGGTGGACAGAAGCAGCGGGTTCAACTAGCACGTGCATTATATCAAGATGCAAATGGATATCTCTTGGATGATCCATTCAGTTCAGTTGATTCACATTCTGCAACTAGTCTATTTAATGCAAAGGAAAAGACACATAATAAACAATGCTACAAAGAGAGGGCTCACAACCCAAGTGAATCTTTATAA 252 0.3889 MGIKMLPFDDLTGIRERDVNMSGGQKQRVQLARALYQDANGYLLDDPFSSVDSHSATSLFNAKEKTHNKQCYKERAHNPSESL* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1073 83 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 72 IPR027417 -
Vvi19g1073 83 Gene3D - 2 75 IPR027417 -
Vvi19g1073 83 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 62 - -
Vvi19g1073 83 MobiDBLite consensus disorder prediction 64 83 - -
Vvi19g1073 83 Pfam ABC transporter 13 48 IPR003439 GO:0005524
Vvi19g1073 83 MobiDBLite consensus disorder prediction 66 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1073 Vvi-Chr19 16057104 16059738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1073 3 80 Calmodulin-binding Proteins AT2G36910 38.462 5.09e-09 49.3