Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1063 ATGCTCGAGCCAAGGGAAGCTGATATACCTGCCCTTTTTCTGTTCTTGATTGTATTTCCTCTGGTTACCTACATTTTACTTGGAAAATGGAGTGAGGTCACAAAGAAGAAAAAGAGAGTAAGTTTGCTTGCTCAACTGGCTGCTGAAGAAGCTTTTAAAGCAGAAGCAATGGCTACTGCCAGTGTTATGCCTCTTGTGTCTTCTTCAAAGAGTGGAAATCATGAATGCGCCAGATGCTTTGGTCCAGCAACAACCCGCTGCTCCAGATGCAAGTCTGTTAGATATTGTTCTGGAAAGTGCCAAATAATTCACTGGAGGCAAGTTCATAAGGAAGAGTGCCAGCAATTAGAAACCCACAGCTCCATTACATCTCTTAAGGATGCTGCAATTGAAGAATCTGTTCATGAGAGGGTCTCAGTTAATGACAGCATGAACTCACAGTTCTATGGTTCTGGTATCAAGCAGACTGTGCTGGAGAAAGCTTCAGGTAATATAATTAATCCTTCATTCAGCACTGGCATGCCTGCCACCAATGCTTGTTCCAGCATTGATACATCTCGAATTACCATGATGGAGAGAAGAACTGGAGACAAGTGGGTTTCCCGAAAATCCAGCAGAGAAATTCTGAAGAAAGAGGATGTAGCCATATGTGGTTCTACTGAAGAGGTCTCTACTAGTAGCAACACCAGCATAACCTCTTCTGACGATATTTCATTAAAGGAGGCATACACAAGACAAAAGTTAGGAAACTGTGACTCTGTTGTATCAGAAGAGGAAATGTATAAAAAATATAATTTTAGTGCTCCTACTGCATTTGCTCGTGGACATACCTCCAGTTCAATGCATGAACGTCATAAGTTGCAAAATCAAAATGGAAATGTATTTGAACCAAGAAGCAACTATGGCATCTCAAGTTCCTGTTCAGAAAAAAATGGCACTAATGGATGTGAAATTGAAAGGGACCATATTTCTTGTGGAGGAAATTTACATAGAGAGGGAATAACTGCTAATGATGAAACAGGGGAGCCAAACTGTTCCCCTGGAATAACCTCAATCAAAAGAAGTGGTAAATCCAAGACTGCATTGCACACATTAGGAACCAAAACAACGAAATCACCAAAAGCATCAATGAAACTATCGAGAGAAGAAACATGCTCAGAAATAGAGAGAAAGGGTCAAACTGCAGAAGCAACTAGAATGAGTGATTCTACTCCCATCCTTGCGCCAGGAAACAATGAGGTTACAAGCATGGGATTTATGAAGATGATGGGTCTAAGGAAGCCTCTAAAACCCCCCAAGCAGGATGCCTCAGAAGAAAGCAGTGATATACATAAGAAAATAAAGATGCTATTTCCTTATGAAGAATTTGTAAGGTTCTTTCAGTGTGAAGTTTTCAACATATCACCTAGGGGCCTTTTGAATTGCGGGAACAGTTGCTACGCTAATGCTGTTTTGCAGTGTTTAACCTGCACAAAGCCTCTCATCATTTATTTGCTTCAGAGATCACATTCAAGAACTTGTTGTGTGACAAATTGGTGCCTTATGTGTGAACTTGAGAAACATGTAATGATGTTGAGAGAGAGTGGAGGCCCTCTTTCTCCAAGTAGAATCCTTTCGCATATGAGGAGTATTAATTGCCAGATTGGTGATGGAAGTCAGGAAGATGCACATGAATTTTTAAGGCTTCTAGTAACATCAATGCAATCTATATGCTTGGAGAAACTGGGTGGTGAAAGGGAAGTTGATGCCAGACTGCAAGAAACAACCTTTATACAACATACTTTTGGTGGGAGGCTTAGATCCAAGGTCAAGTGCCTGCGATGTCATCTCGAGTCAGAAAGATATGAAAACATAATGGATCTTACATTGGAGATATTTGGGTGGGTTGAGTCATTGGAAGATGCACTCACTCAATTTACGACTCCTGAGGATTTGGATGGAGAAAATATGTATCGATGTAGAAGGTGTACTACATATGTTCGAGCAAGAAAGCAGCTGAGCATACATGAAGCTCCCAACATCCTGACAATTGTCTTGAAGAGATTTCAGGAGGGAAGATATGGAAAGATAAACAAGTGTATTACTTTCCCTGACATGCTAGATATGATCCCATTCATGACTGGGACATATGATGTTCCTCCACTTTACATGCTGTATGCTGTTGTTGTGCATATGGATACACTGAATGCATCCTTTTCTGGACATTACGTGGCGTATGTGAAAGATTTGCAAGGCAATTGGTTCAGGGTAGATGATGCTGAGGTTCAGCCAGTGTCAACGAATCAGGTGATGTCAGAAGGAGCCTATATCTTATTTTATATGAGGTCTTGGCCCCGGCCTCCAAGAGCTTTTCCTGTTAAAGCTATCCAGCAGCAAGCTCCAGCCTCTGCAAAGCACTGCTCTTCCAAGACACATAAATCCTCAAGGAGCAAACCCAGAGGTGACTTTGTTGGCCTAGAGCCATCAAACCCCAAACGAGAGGTTTCACCAGGCTTTAGCAGCGCCACCTCTAATGGAATTCTTAGGAATGGCCGGAATGGGAGCAGGACTTATGTCGAGCCAATCAGCCAGGAGTTCTCAGATGCTCCATCAAGTGATTGGTCCCTTTTTACAAGCTCTGATGAGGCATCTTTTACCACTGAGAGTACTAGAGATTCTTTCAGTACTGTAGATTATGCTGAAACATGCAATGTAGATCCTATCTCCTCAATCTTCAATACCTCATATATGCCAGAATACGCCTCAGGCAATGCTGTCTCCTGTAGAATGTTGTCAAATGGTAAGCTGGAGACAAGGTATGTGCAGGAGAAGAAGGGGTATGTTTTGGACTCATATTTGCCAACCCAACCTGATAAAGCATGGAAAGGAGAGAATTTGAAACAGGTCAGTGTTTCAACCGAATTCCCTTCTGATTGCAACTGTGGCATGTCTGTAAAATATGGGAGTAACCCAAAAGATACTTTTGTTAGAACATCTGGTTGTTGTAAACTCTAA 2994 0.4178 MLEPREADIPALFLFLIVFPLVTYILLGKWSEVTKKKKRVSLLAQLAAEEAFKAEAMATASVMPLVSSSKSGNHECARCFGPATTRCSRCKSVRYCSGKCQIIHWRQVHKEECQQLETHSSITSLKDAAIEESVHERVSVNDSMNSQFYGSGIKQTVLEKASGNIINPSFSTGMPATNACSSIDTSRITMMERRTGDKWVSRKSSREILKKEDVAICGSTEEVSTSSNTSITSSDDISLKEAYTRQKLGNCDSVVSEEEMYKKYNFSAPTAFARGHTSSSMHERHKLQNQNGNVFEPRSNYGISSSCSEKNGTNGCEIERDHISCGGNLHREGITANDETGEPNCSPGITSIKRSGKSKTALHTLGTKTTKSPKASMKLSREETCSEIERKGQTAEATRMSDSTPILAPGNNEVTSMGFMKMMGLRKPLKPPKQDASEESSDIHKKIKMLFPYEEFVRFFQCEVFNISPRGLLNCGNSCYANAVLQCLTCTKPLIIYLLQRSHSRTCCVTNWCLMCELEKHVMMLRESGGPLSPSRILSHMRSINCQIGDGSQEDAHEFLRLLVTSMQSICLEKLGGEREVDARLQETTFIQHTFGGRLRSKVKCLRCHLESERYENIMDLTLEIFGWVESLEDALTQFTTPEDLDGENMYRCRRCTTYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPDMLDMIPFMTGTYDVPPLYMLYAVVVHMDTLNASFSGHYVAYVKDLQGNWFRVDDAEVQPVSTNQVMSEGAYILFYMRSWPRPPRAFPVKAIQQQAPASAKHCSSKTHKSSRSKPRGDFVGLEPSNPKREVSPGFSSATSNGILRNGRNGSRTYVEPISQEFSDAPSSDWSLFTSSDEASFTTESTRDSFSTVDYAETCNVDPISSIFNTSYMPEYASGNAVSCRMLSNGKLETRYVQEKKGYVLDSYLPTQPDKAWKGENLKQVSVSTEFPSDCNCGMSVKYGSNPKDTFVRTSGCCKL* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1063 997 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 470 776 IPR028889 -
Vvi19g1063 997 FunFam Ubiquitin carboxyl-terminal hydrolase 15 67 117 - -
Vvi19g1063 997 MobiDBLite consensus disorder prediction 794 848 - -
Vvi19g1063 997 Gene3D Cysteine proteinases 466 780 - -
Vvi19g1063 997 Pfam MYND finger 76 113 IPR002893 -
Vvi19g1063 997 FunFam Ubiquitin carboxyl-terminal hydrolase 15 464 784 - -
Vvi19g1063 997 Gene3D - 65 119 - -
Vvi19g1063 997 Pfam Ubiquitin carboxyl-terminal hydrolase 471 773 IPR001394 GO:0004843|GO:0016579
Vvi19g1063 997 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Vvi19g1063 997 MobiDBLite consensus disorder prediction 388 411 - -
Vvi19g1063 997 MobiDBLite consensus disorder prediction 827 848 - -
Vvi19g1063 997 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 230 777 - -
Vvi19g1063 997 MobiDBLite consensus disorder prediction 397 411 - -
Vvi19g1063 997 SUPERFAMILY Cysteine proteinases 468 780 IPR038765 -
Vvi19g1063 997 MobiDBLite consensus disorder prediction 339 361 - -
Vvi19g1063 997 CDD Peptidase_C19E 469 774 - -
Vvi19g1063 997 MobiDBLite consensus disorder prediction 336 361 - -
Vvi19g1063 997 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 471 486 IPR018200 GO:0004843|GO:0006511
Vvi19g1063 997 SUPERFAMILY HIT/MYND zinc finger-like 73 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1063 Vvi-Chr19 15756688 15778894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1063 445 779 Miscellaneous Gene Families AT4G31670 51.642 3.81e-121 382