Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1034 ATGGTTACTTTCAAGTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAGCATCCGAGGATCTACAGGATGAAGCTTTGGGCTACGAACGAGGTTCGTGCCAAATCCAAGTTTTGGTATTTCTTGAGGAAGCTCAAGAAAGTTAAGAAGAGCAATGGTCAAGTTTTGGCAATTAATGAGATTTTTGAGAAGAATCCCACCAAGATAAAAAACTATGGAATTTGGTTGCGATATCAGAGCCGAACTGGATATCACAACATGTACAAGGAATATCGGGACACTACACTCAATGGTTCTGTCGAACAAATGTATACTGAGATGGCTTCTCGCCACCGAGTTAGGTATCCATGCATTCAAATCATTAAGACAGCCACCATACCAGCTAAGCTTTGCAAAAGGGAGAGCACCAAGCAGATGCATAACTCCAAAATCAAGTTCCCTTTGGTGGTCAGGAAGGTTAGGCCACCCACTAGGAAGCTGAAGACTACATACAAGGCATCTAGGCCAAACTTGTTTATGTAA 537 0.4376 MVTFKFHQYQVVGRALPSESDEHPRIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGSVEQMYTEMASRHRVRYPCIQIIKTATIPAKLCKRESTKQMHNSKIKFPLVVRKVRPPTRKLKTTYKASRPNLFM* 179
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1034 178 Gene3D - 1 70 - -
Vvi19g1034 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Vvi19g1034 178 FunFam 60S ribosomal protein L18a 1 71 - -
Vvi19g1034 178 Gene3D - 71 144 - -
Vvi19g1034 178 SUPERFAMILY RplX-like 71 146 - -
Vvi19g1034 178 FunFam 60S ribosomal protein L18a 72 147 - -
Vvi19g1034 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 3 177 IPR028877 -
Vvi19g1034 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vvi19g1034 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi19g1034 Vvi-Chr19 14717503 14720642 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1034 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 88.764 3.16e-121 339