Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1027 ATGAGTTCCAATCGGAGGGACTCATACCCCATGTCGAAACTGCAATTTGAGGGAGAAGATGAAGAAGAACTGGGCAAGTTGGCCGTTCGCTTGGCCAACAGCATCATTCTTCCGATGGCTTTGAAATCGGCCCTGGAGCTTAACCTCATCGAAATTATGGCCGGAGCCGGCGACGGTGCATTACTCTCGCCCTCCGAGATAGCGGCTCAACTTCCCGCCCGGAACCCCGATGCGCCGGTCCTGCTGGACCGGGTTCTGCGGCTTCTCGCCAGCTACTCTATTCTCAGGTGCTCTCTGCGGACCCTTGACAATGGTGAAGTGGAGAGATTGTACGGCGTTGGACCCATTTGCAAGTTCCTCACCCGGAATCCAGACGGTGGGTCGATTGGTCCTCTGTTACTGTTGCACCACGACAAGGTCTTCATGGAGAGCTGGTACCACTTGAATGATGCTATACTGGAAGGAGGAATTCCCTTCAATCGGGCGTACGGAATGACAGATTTTGAATACCTAGGAACAGATCAAAGATTCAACAGGGTGTTCAACGAGGCAATGTCAAATCATTCTACGTTGATAATGAAAAGGATACTCCAGATTTACAAAGGGTTTGAAGGCCTCCAAGTGTTGGTTGATGTGGGAGGTGGTATTGGGGTCACTCTTAGAATCATCACTTCCGAATATCCTCAGATTAAGGGCATCAATTATGATCTGTCTCATGTTTTAGCAGACGCCCCCTCTTATCCTGGTGTGGAGCATGTTGGGGGAGATATGTTTGAGAGTGTTCCCAAAGGGGACGCCATTTTTATGAAGTGGATTCTTCATGGCTGGAGTGATGAGCACTGTCTGAAGCTTCTCACCAATTGCTTTGAAGCTCTCCCTGATAACGGGAAGGTGATCATCGTGGAATCCATTCTTCATGTGGCTCCAGAGAATACAGTCTCGGTCAACATTCCTTTCGAGCAAGATCTACTCATGCTGGCTCAAAGCCCTGGAGGAAAAGAAAGGACCCAGAAGGAGTATGAGACCTTGGCCATAAAATCAGGATTTTCTGGCTGCAAGGTCATCTGCAGTGTTTACAACAGTTGGGTTATGGAGTTCCACAAGACAGCACACCCATAG 1119 0.4933 MSSNRRDSYPMSKLQFEGEDEEELGKLAVRLANSIILPMALKSALELNLIEIMAGAGDGALLSPSEIAAQLPARNPDAPVLLDRVLRLLASYSILRCSLRTLDNGEVERLYGVGPICKFLTRNPDGGSIGPLLLLHHDKVFMESWYHLNDAILEGGIPFNRAYGMTDFEYLGTDQRFNRVFNEAMSNHSTLIMKRILQIYKGFEGLQVLVDVGGGIGVTLRIITSEYPQIKGINYDLSHVLADAPSYPGVEHVGGDMFESVPKGDAIFMKWILHGWSDEHCLKLLTNCFEALPDNGKVIIVESILHVAPENTVSVNIPFEQDLLMLAQSPGGKERTQKEYETLAIKSGFSGCKVICSVYNSWVMEFHKTAHP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1027 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 366 IPR029063 -
Vvi19g1027 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 368 IPR016461 GO:0008168
Vvi19g1027 372 PANTHER O-METHYLTRANSFERASE 31 351 IPR016461 GO:0008168
Vvi19g1027 372 Gene3D - 8 120 IPR036388 -
Vvi19g1027 372 SUPERFAMILY "Winged helix" DNA-binding domain 20 123 IPR036390 -
Vvi19g1027 372 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Vvi19g1027 372 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Vvi19g1027 372 FunFam Caffeic acid 3-O-methyltransferase 8 120 - -
Vvi19g1027 372 Gene3D Vaccinia Virus protein VP39 121 368 IPR029063 -
Vvi19g1027 372 FunFam Caffeic acid O-methyltransferase 121 368 - -
Vvi19g1027 372 PIRSF O-mtase 7 368 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1027 Vvi-Chr19 14523870 14525428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1027 21 368 Monolignol Biosynthesis Gene Families AT5G54160 62.356 1.63e-167 470