Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1023 ATGTCGCTGACAGAGATTTCGATAATACATCATGTGGCAATGGTGCTGATTTTTCTCTGGCTGCTTTCTTCTTTAAGTTGGAACCACCCAATTGCTTACTTTGTGTCTTTGATTTATCTCTACCAGGTTCATGAGCAGTATATTATGAGGATGAGGAGGAAACTACAATTCAAGGAAAGAAAAGAAGCTAATCGGAAAAGGGTACTTTCTGATTCTGAGTCAGTGCGGTGGTTGAACCATGCAGTTGAAAAGATTTGGCCCATATGTATGGAACAGATTGTTTCACAGAAAATTCTCCTTCCTATCATACCTTGGTTCTTGGAGAAGTACAAACCCTGGACAGCTAAGAAAGCCATTGTTCAGCACTTGTACATGGGAAGAAACCCACCTATGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTGGTTTTGGGGTTGGGAATGAATTTTCTCACTGCTGATGATATGAGTGCAATACTAGCTATAAAACTGAGGAGAAGATTGGGATTTGGAATGTGGGCAAAATTACATTTGACTGGCATGCATGTTGAAGGGAAGGTTTTGATTGGAGTAAAGTTTATACGGAATTGGCCATTCATTGGTCGTTTGAGGGTGTGCTTTGCAGAGCCACCATATTTTCAGATGACAGTGAAGCCTATCTTCACTCATGGACTTGATGTTACAGAACTTCCAGGGATTGCTGGATGGCTAGATAAGCTTCTTGCTGTTGCATTTGAGCAGACTCTTGTTGAGCCCAATATGCTGGTTGTTGATGTAGAGAAATTTGTTTCACCAAATAAAGAGGATTGGTTCTCGGTCGATGAGAAGGAGCCTATTGCCCTTGCCAGAGTGGAAGTTCTTGAAGCATCAGACATGAAACCATCAGATTTAAATGGATTGGCTGATCCATATGTAAAGGGGAAACTTGGACCTTACAGATTCACGACTAAGATACAAAAGAAGACTCTCACTCCAAAATGGAATGAAGAATTCAAGATCCCCATCTGTTCATGGGAGTTGCCTAATATGCTAGTCATTGAAGTTCGTGACAAAGACCATTTTGTTGACGATACCCTTGGGGCCTGTTCCCTAAACATCAATGATCTTAGGGGTGGCCAGAGACATGACATGTGGTTGCCTCTCAAGAACATCAAAATGGGGAGGTTGCATCTTGCAATTACTGTACTTGAAGACAACGAAGAGGAAGCAGATCAGCTAGATGACGAGGAAATACTTGATCATAAAACATTAGATGAAGAAGATAAAGATCAGGAAGATAAAAGAAATTCCCTTGCAAGGGAGACTTCTCTCAGAGATTCCTTCTCATCTGCATCAGAAAGAACTTCAAAAGTGGCAGATAAATATGAACCCATCAATCTTGAAGGGCAGCAGGAGACTGGAATATGGGTCCACCACCCAGGAAGTGAAGTTTCACAAACTTGGGAGCCTAGAAAAGGGAAGAGTAGGCACATTGATTCCCAAATCACTGGAGAGGGTAATGATTCTTTTAGGAGCCCTAATTCAATTGCATATGGATCATTTCACAATGATGGCAGCAGCACTGACGAGAATTCTGAGGGTAAGAAAGCACAAGCAATGAACACAGTTCGGAGGGGCCTAGAGAAGATTGGTACAGTGTTCCATAGAAATAGGAAGGAAGATAATTCCAGTAACATTGGTGAGATCATTCCATCTCCACCTTCTAACATTAAGGAAGTCAATTCCAAGGCGATTGGTGTTAGGTTTATAGTGGAGGACAACCTTTCTAAGCCTTCTTCTGCTGAGGTTCCAAAAGAAGACAGGAGTCCAGGTCATGAGGGAAGTGGCACTGAAAGCCCGAGCCAGGGGAATGTGAAAGACATGGCAAAATGCTTTTTAAAGCAGGCTGGGAAATCTGCTCGTGGCATAAAACATGCCCTTTCCCGGAAAGGTTCAAGAAAATCTCAGGGTGATCAAGAAATTCCTGTGTTTGACTCTTCTGATGAGGACTCTGCTTCTTCATCAGTTTGTACCTCCACAATGGAAGCAATTCCTATTATTTCCACTCCCATATCCAGCCATGGAAATGATCCTGTAGCCCATAAGGAGCAAGTTGTTTTGATAGGTGCTCCTGCTGCTAGCATTGAGGAACCAGTGAGTGAGACGAAAGTGGATGATGAAGGTAGAGAAGGGATGGGCGATAACATTGCAAGCAGCTCTGAAGGAAATGGTGATGAGTTGGTTGAGCAGTCATCCAGTTTTGAGCCTTCTGTGGAGAAGTCGGAAAGAGAGAAAATGGAGAATCCTAGTGTAGCCAGTTAA 2316 0.4266 MSLTEISIIHHVAMVLIFLWLLSSLSWNHPIAYFVSLIYLYQVHEQYIMRMRRKLQFKERKEANRKRVLSDSESVRWLNHAVEKIWPICMEQIVSQKILLPIIPWFLEKYKPWTAKKAIVQHLYMGRNPPMFTEMRVIRESTDDDHLVLGLGMNFLTADDMSAILAIKLRRRLGFGMWAKLHLTGMHVEGKVLIGVKFIRNWPFIGRLRVCFAEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLAVAFEQTLVEPNMLVVDVEKFVSPNKEDWFSVDEKEPIALARVEVLEASDMKPSDLNGLADPYVKGKLGPYRFTTKIQKKTLTPKWNEEFKIPICSWELPNMLVIEVRDKDHFVDDTLGACSLNINDLRGGQRHDMWLPLKNIKMGRLHLAITVLEDNEEEADQLDDEEILDHKTLDEEDKDQEDKRNSLARETSLRDSFSSASERTSKVADKYEPINLEGQQETGIWVHHPGSEVSQTWEPRKGKSRHIDSQITGEGNDSFRSPNSIAYGSFHNDGSSTDENSEGKKAQAMNTVRRGLEKIGTVFHRNRKEDNSSNIGEIIPSPPSNIKEVNSKAIGVRFIVEDNLSKPSSAEVPKEDRSPGHEGSGTESPSQGNVKDMAKCFLKQAGKSARGIKHALSRKGSRKSQGDQEIPVFDSSDEDSASSSVCTSTMEAIPIISTPISSHGNDPVAHKEQVVLIGAPAASIEEPVSETKVDDEGREGMGDNIASSSEGNGDELVEQSSSFEPSVEKSEREKMENPSVAS* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1023 771 CDD SMP_SF 94 263 - -
Vvi19g1023 771 CDD C2 288 386 - -
Vvi19g1023 771 MobiDBLite consensus disorder prediction 500 536 - -
Vvi19g1023 771 MobiDBLite consensus disorder prediction 481 537 - -
Vvi19g1023 771 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 1 706 - -
Vvi19g1023 771 MobiDBLite consensus disorder prediction 734 753 - -
Vvi19g1023 771 MobiDBLite consensus disorder prediction 405 461 - -
Vvi19g1023 771 ProSiteProfiles C2 domain profile. 270 384 IPR000008 -
Vvi19g1023 771 MobiDBLite consensus disorder prediction 414 439 - -
Vvi19g1023 771 Pfam C2 domain 288 386 IPR000008 -
Vvi19g1023 771 MobiDBLite consensus disorder prediction 657 675 - -
Vvi19g1023 771 Gene3D C2 domain 269 402 IPR035892 -
Vvi19g1023 771 PRINTS C2 domain signature 349 357 IPR000008 -
Vvi19g1023 771 PRINTS C2 domain signature 326 339 IPR000008 -
Vvi19g1023 771 PRINTS C2 domain signature 302 314 IPR000008 -
Vvi19g1023 771 SMART C2_3c 286 383 IPR000008 -
Vvi19g1023 771 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 277 403 IPR035892 -
Vvi19g1023 771 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 71 265 IPR031468 GO:0008289
Vvi19g1023 771 MobiDBLite consensus disorder prediction 597 611 - -
Vvi19g1023 771 MobiDBLite consensus disorder prediction 708 771 - -
Vvi19g1023 771 MobiDBLite consensus disorder prediction 594 675 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1023 279 398 Lipid Metabolism Gene Families AT3G61300 31.200 5.13e-09 58.2