Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1022 ATGACTTCACGTTCATGTTCCATTTTACTAAGAATTTACCGATCAGTCTCTCGTTCCGCATTGATTCATCCAACCCTCATCCAAAAATCAACTTTTTTCTCTACATTCCCTCCCGATGATCTGAAAAGACTCGATCACAAGGACTGGTTGTCACCTAGAGAAGTCCTGAAAATCTTCGACGGTCTGAGAAACCCAGAATCAGTAATGCCAGTCTTGGATAGTGTTTCCAAGAGAAAAGACTTCAAACCCAATGAAGCCCTTTACACTCTGGTAATCAACAAGTTGGCACAAGCCCGCATGTTTGATGCCATTGAAGATGTCATAAAGACGCTCAAGATTGATAAGCAATGTAGATTATCTGATGTGTTTTTCTATAACGTTATCAAGGTTTATGGGAATGTTGCAGGTCAGCCTGACAGGGCTGTTGAGACCCTTTTTGATATGCCCAAGTTCCATTGTTGGCCTTCTGTGAAGACCTTCAATCTTGTGCTGAATATGCTTGTATCAGCGAAAAGATTTGATGTTGTTCACAAGGTGTATGCGGGCGCTCCTGAGTTGGGTGTAGAGATTGACGCCTGTTGTTTGAATATACTTGTGAAGGGGTTGTGTAGAAGTGGTAATGTGGATGCGGCATGTGAGCTGCTCGATGAATATCCTAAACAAAGGTGTAGGCCCAATGTGAGGACATTTTCGACTCTGATGCATGGGTTGTGTGAAAGTGGTAGGGTGGAGGGAGCGTTGGGGTTGTTGGAGAGGATGGAGAGGGAGGGCGTTTACCCTGATACCGTCGTGTTCAATATATTGATATCGGGGCTGAGGAAGCGAGGGAGAGTTGAAGAGGGGATGGAGCTTCTGGGGAGAATGAAGCTGAAAGGGTGCTACCCGAATGCGGGGTCTTATCAGGAGGTTTTGTATGGTGTTCTTGATACTGGGAGGTTTGGTAAGGCAAAGGAGTTCATGTGTCAGATGATAGATGAAGGTGTAAGTCCGAGTTTTGTGTCTTATAAGATGATGATCTATGGGCTTTGCAAGGAGAACCTAGTTGCTGATGTGGTTTGGATTTTGAAGCAAATGGTGGAACAAGGCTTTGTTCCGGAGAGGTGGATGTGGAGGCGGATTCTTCAGACCATGTTCCCAAGGAATGTCTCTCAGTCTGAAATTATGGAGGAAGTAGCCACTTGA 1182 0.4501 MTSRSCSILLRIYRSVSRSALIHPTLIQKSTFFSTFPPDDLKRLDHKDWLSPREVLKIFDGLRNPESVMPVLDSVSKRKDFKPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGQPDRAVETLFDMPKFHCWPSVKTFNLVLNMLVSAKRFDVVHKVYAGAPELGVEIDACCLNILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFSTLMHGLCESGRVEGALGLLERMEREGVYPDTVVFNILISGLRKRGRVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLDTGRFGKAKEFMCQMIDEGVSPSFVSYKMMIYGLCKENLVADVVWILKQMVEQGFVPERWMWRRILQTMFPRNVSQSEIMEEVAT* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1022 393 Pfam PPR repeat family 191 238 IPR002885 -
Vvi19g1022 393 Pfam PPR repeat family 260 304 IPR002885 -
Vvi19g1022 393 Gene3D Tetratricopeptide repeat domain 179 291 IPR011990 GO:0005515
Vvi19g1022 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi19g1022 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vvi19g1022 393 Gene3D Tetratricopeptide repeat domain 292 392 IPR011990 GO:0005515
Vvi19g1022 393 NCBIfam pentatricopeptide repeat 333 365 IPR002885 -
Vvi19g1022 393 NCBIfam pentatricopeptide repeat 194 227 IPR002885 -
Vvi19g1022 393 NCBIfam pentatricopeptide repeat 229 262 IPR002885 -
Vvi19g1022 393 NCBIfam pentatricopeptide repeat 263 297 IPR002885 -
Vvi19g1022 393 Pfam PPR repeat 333 363 IPR002885 -
Vvi19g1022 393 Pfam Pentatricopeptide repeat domain 134 168 IPR002885 -
Vvi19g1022 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Vvi19g1022 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi19g1022 393 PANTHER ATPASE EXPRESSION PROTEIN 3 46 366 - -
Vvi19g1022 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vvi19g1022 393 Gene3D Tetratricopeptide repeat domain 26 178 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1022 72 381 Glycosyltransferase AT1G05670 25.316 1.51e-31 124