Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0968 ATGTCTCCTGAGTATGCTTTGGAAGGTCTTTTCTCCACTAAATCTGATGTCTTTAGCTTTGGGGTCTTGTTAATGGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAACCGACTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAGACAGCAGGGGGCAGGAGTTGATGGATCCAGGGTTGGAAGAGACTTCGCCAACACACATTTTGTTGAGGTACATCAATGTAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGACAGGCCTACCATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTGTACGTTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGGTGGAACCACATATATCCCAAAACAGGCCTGGAATTTATTCCTTAAATGGTGTGACACTTTCAGTTATGGAAGCACGATAA 450 0.4311 MSPEYALEGLFSTKSDVFSFGVLLMEILSGKKNTGFYQTDSLNLLGYAWDLWKDSRGQELMDPGLEETSPTHILLRYINVGLLCVQESADDRPTMSDVVSMLGNESVRLPSPKQPAFSNLRSGVEPHISQNRPGIYSLNGVTLSVMEAR* 150
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0968 149 FunFam Uncharacterized protein 1 111 - -
Vvi19g0968 149 SUPERFAMILY Protein kinase-like (PK-like) 1 127 IPR011009 -
Vvi19g0968 149 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
Vvi19g0968 149 Pfam Protein tyrosine and serine/threonine kinase 1 102 IPR001245 GO:0004672|GO:0006468
Vvi19g0968 149 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 148 - -
Vvi19g0968 149 Pfam Domain of unknown function (DUF3403) 104 149 IPR021820 GO:0004674
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi19g0968 Vvi-Chr19 12248937 12249628 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0968 1 117 Receptor kinase-like Gene Family AT4G23250 52.101 4.22e-38 135
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0968 PK_Tyr_Ser-Thr 3.3e-10 CL0016