Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0967 ATGAAACTTGGATATGACAAAAGGGCTGGAAAAACATGGTCATTGGTGTCATGGAAGAGCAGAGAAGATCCCAGTCCAGGAGCTTTCTCCATAGAACACGACGCGAATGAAAGTAGCCAGATTTTTAACCTGCAAGGACCCAAAATGTATTGGACTAGTGGGGTGTGGGATGGGCAGATTTTCAGCCAGGTTCCTGAGATGCGTTTCATCTACATGTACAAGTACAATACATCCTTTAATGAGAATGAAAGCTATTTTTCTTACTCTCTTCATAATCCCTCCATTCTGAGCAGAGTGGTGCTAGATGTGTCAGGCCAGGTTAGGCGTCTGAATTGTCATGAAGGCACACATGAATGGGATTTATATTGGCTTCAACCAAAAACACAGTGTGAGGTTTATGCTTACTGTGGGCCTTTCGGAACCTGCACTCGGGATTCTGTTGAATTTTGTGAATGCTTGCCAGGTTTTGAACCTCGCTTCCCTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCGTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACAATACAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATAGCTGCCCTTGCTCCGCTTATGCTTATGAGGGAGAGGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGGTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAAGCAGCGAGTGGAAGGTATGGCTAATTGTTACACTGGCCATATCTTTAACTTCAGCCTTTGTCATTTATGGGATATGGGGAAGGTTCCGAAGAAAAGGGGAAGATTTGTTACTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTGCTATGAGCTTGGCGAGACAAATAGACTTTGGAGGGGCGAGAAGAAGGAAGTTGATTTGCCCATGTTCAGTTTTGCGAGTGTATCTGCTTCTACAAATAACTTCTGTAATGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAAGATATGAAGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAAAGTTTTGGGATACTGCATCGAGCGGGATGAGAAGATATTGATTTACGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCTACAAAACATGGGATTCTGAATTGGAAGACATGGGTTCACATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTGCATCAGTACTCCAGAATGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTAGATAAGGATATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGGCAACGAACCAAAAGCAACAAATCATATAGTTGGGACTTAG 1569 0.4257 MKLGYDKRAGKTWSLVSWKSREDPSPGAFSIEHDANESSQIFNLQGPKMYWTSGVWDGQIFSQVPEMRFIYMYKYNTSFNENESYFSYSLHNPSILSRVVLDVSGQVRRLNCHEGTHEWDLYWLQPKTQCEVYAYCGPFGTCTRDSVEFCECLPGFEPRFPEDWNLQDRSGGCVRKADLQCVNESHANGERDQFRLVSNVRLPKYPVTIQARSAMECESICLNSCPCSAYAYEGEECRIWGGDLVNVEQLPDGDSNGRSFYIKLAASELNKRVSSSEWKVWLIVTLAISLTSAFVIYGIWGRFRRKGEDLLLFDFGNSSEDTSCYELGETNRLWRGEKKEVDLPMFSFASVSASTNNFCNENKLGEGGFGSVYKGKSQRRYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPTKHGILNWKTWVHIIEGVAQGLLYLHQYSRMRIIHRDLKASNILLDKDMNPKISDFGMARIFGGNEPKATNHIVGT* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0967 522 CDD PAN_AP_plant 178 265 - -
Vvi19g0967 522 SUPERFAMILY Protein kinase-like (PK-like) 342 522 IPR011009 -
Vvi19g0967 522 ProSiteProfiles PAN/Apple domain profile. 181 265 IPR003609 -
Vvi19g0967 522 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 513 - -
Vvi19g0967 522 SMART ntp_6 189 264 IPR003609 -
Vvi19g0967 522 Gene3D Transferase(Phosphotransferase) domain 1 434 522 - -
Vvi19g0967 522 Gene3D Phosphorylase Kinase; domain 1 334 433 - -
Vvi19g0967 522 ProSiteProfiles Protein kinase domain profile. 358 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0967 522 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 434 522 - -
Vvi19g0967 522 Pfam PAN-like domain 189 247 IPR003609 -
Vvi19g0967 522 SUPERFAMILY Hairpin loop containing domain-like 191 247 - -
Vvi19g0967 522 Pfam Protein kinase domain 360 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0967 522 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Vvi19g0967 522 Pfam S-locus glycoprotein domain 51 159 IPR000858 GO:0048544
Vvi19g0967 522 FunFam Uncharacterized protein 333 433 - -
Vvi19g0967 522 SMART serkin_6 358 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0967 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0967 Vvi-Chr19 12246638 12248830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0967 341 522 Receptor kinase-like Gene Family AT4G23190 60.656 3.18e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0967 Pkinase 7.5e-36 CL0016