Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0962 ATGACGAGGATTGGGTTTGATCTGTTATCATTTGCAGCTAGTACGCTTGTTCACATATACACATTGTGTGGGAATATTAAGAAGACAAGACATGTTTTCAATGAGATGCTGAGACTAGATTTAGTACCATGGACTTCCCTAATTATTGGTTATGTTCAGAATGCCCAAGCTGACGAGGCTCTTCAGTTCTCTGGGCTGCTATTCAAATCAAGAACTCAACCTGATCACATTACCTTTGTCGGGGTTCCTTCTATTTGTACTCATGTTGATTTGGCCTCTGTGTCTCCCTGCACCGAGACGAGTCAGATTTCAAGAGGAGTGGAGCATGCAGGTGCAACTGAGGTTATATTTAGTGAGGTGGAAAATGAGAATCCAAAGGAAGCAGAATGGTTTCCAGCACCAGAAAGGCAAGAACGAATTGCCCAATTGCAAGCAAAACTGTTCCATGCAGCTGCACCACCCAGTTTAGCTGTTCAGATGGATGGTTCATATATTCTGGGCGAGGTAGATGCTCTAGAATGGGTATATCATGAGAGGGAGGTATACCCAATTTGGCTCTGCCCACATCGATTGTACAAGCTTCCTGTCGAAACAATGATATATCCTGAACCAGGCTTTGAGCTGCCTCGCAAACAGGGTGACACGCATTATGCCCAGATGTACACAGATGTGGAGATGTACTATGCGCCAGGGCCTGTCTTGAGGGGATAG 711 0.4515 MTRIGFDLLSFAASTLVHIYTLCGNIKKTRHVFNEMLRLDLVPWTSLIIGYVQNAQADEALQFSGLLFKSRTQPDHITFVGVPSICTHVDLASVSPCTETSQISRGVEHAGATEVIFSEVENENPKEAEWFPAPERQERIAQLQAKLFHAAAPPSLAVQMDGSYILGEVDALEWVYHEREVYPIWLCPHRLYKLPVETMIYPEPGFELPRKQGDTHYAQMYTDVEMYYAPGPVLRG* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0962 236 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 92 IPR046960 GO:0003723|GO:0009451
Vvi19g0962 236 Pfam PPR repeat 14 39 IPR002885 -
Vvi19g0962 236 Pfam PPR repeat 43 62 IPR002885 -
Vvi19g0962 236 NCBIfam pentatricopeptide repeat 14 44 IPR002885 -
Vvi19g0962 236 Gene3D Tetratricopeptide repeat domain 1 148 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0962 Vvi-Chr19 12173800 12174741 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0962 1 93 Glycoside Hydrolase AT3G49170 27.957 1.06e-10 59.3