Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0959 ATGACGAGGATTGGGTTTGATCTGTTATCATTTGCAGCTAGTACGCTTGTTCACATATACACATTGTGTGGGAATATTAAGAAGACAAGACATGTTTTCAATGAGATGCTGAGACTAGATTTAGTACCATGGACTTCCCTAATTATTGGTTATGTTCAGAATGCCCAAGCTGACGAGGCTCTTCAGTTCTCTGGGCTGCTATTCAAATCAAGAACTCAACCTGATCACATTACCTTTGTCGGGGTTCCTTCTATTTGTACTCATGTTGATTTGGCCTCTGTGTCTCCCTGCACCGAGACGAGTCAGATTTCAAGAGGAGTGGAGCATGCAGGTGTAACTGAGGTTATATTTAGTGAGGTGGAAAATGAGAATCCAAAGGAAGCAGAATGGTTTCCAGCACCAGAAAGGCAAGAACGAATTGCCCAATTGCAAGCAAAACTGTTCCATGCAGCTGCACCACCCAGTTTAGTTGTTCAGATGGATGGTTCATATGTACCGAGAAATAATCTGGAGGAAGCAATCCTACTTTTGATGATTCTTATGGAAAATTTTACCTTGTGGAGCAGATTCTGGGCGAGGAACTGGGAGTGGCATTCTTGTGATCTGGTTAGCACAAGCAGGTGCAAAGATGGTTTATGCAGTGGAAGCGAGCTAGAGAAGGGGATTTACAGGAAGCTAGGTACCCTGGCATCTTCACTCTTCCTCTTCAGGTTTTCTCTGCAGAATCAAGCAAGAGGTCTTCATGATCCTGAAGCTCTGGCAAGGGAAGCAGTATTTAGTGTGAGTGAGATAGAGGCACCATACGGGCTGTTTAAGAAGGTCAGCAGCGCTGTGATTGATGGTGGTACATTCAATGGTTTGAGTTTTACGCAGGGTTTTCAGAATTTGATGATCCCAATCCACAAGTTGATCGAGTAA 918 0.439 MTRIGFDLLSFAASTLVHIYTLCGNIKKTRHVFNEMLRLDLVPWTSLIIGYVQNAQADEALQFSGLLFKSRTQPDHITFVGVPSICTHVDLASVSPCTETSQISRGVEHAGVTEVIFSEVENENPKEAEWFPAPERQERIAQLQAKLFHAAAPPSLVVQMDGSYVPRNNLEEAILLLMILMENFTLWSRFWARNWEWHSCDLVSTSRCKDGLCSGSELEKGIYRKLGTLASSLFLFRFSLQNQARGLHDPEALAREAVFSVSEIEAPYGLFKKVSSAVIDGGTFNGLSFTQGFQNLMIPIHKLIE* 306
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0959 305 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 92 IPR046960 GO:0003723|GO:0009451
Vvi19g0959 305 Pfam PPR repeat 14 39 IPR002885 -
Vvi19g0959 305 Pfam PPR repeat 43 62 IPR002885 -
Vvi19g0959 305 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi19g0959 Vvi-Chr19 12154284 12157720 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0959 230 289 EF-hand Containing Proteins AT5G55990 60.000 1.74e-13 67.0