Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0946 ATGGCGCAGAATGCTGATGAATATGCTCCAGTCTCTTCCCCTTCATCTTTGCAAAGGATTAGCAGCTCCGAATTCTATGAAGCAGGTTTAATCTATTACTTGGAACTGTACCAAGCTGTGCTCAATGGTGACTGGGAAAGTGCTTCAAAAATATTGGAGGATGATCCACAATCATTGTCCGCCCCGATCGGAACAGATGATTCCCCAGTGCTTCACATAGCAGTTGGGTTAGGAGAGGCCAGAATGGGTTTCGTGAAGAAGTTGGTTGAGTTTATGCCAAGTGATAAACTGGCTCTGCAGGATTCTGATGGCGCCACTGCCCTTTTCAACGCTGTAAGTGCTGGCAATATAAAAGCAGTCAAGTTGTTAGTGAACAAAAACCCAAGCTTGCCCAATATCTGCCAACTACAACTTTTAGTGCCTCTTCACAGCGCTCTTAGGTGTGCTCATAAAGAGCTGACTTTATATTTATTAACCGTCACCAGAGATGATGTAGATCCAAGTCCTTTCGCAGACAAGCCTGGATTCGAACTTTTGCGCAGAGCTCTAATGGTGGGGTTTCATGATGTAGCACTGTATCTGGTTAAACGTTATCCTGACCTTGCCACATGCCATTTCGATTCCGCCCGCCACGATGATGCAAATGATTCTGATGAGGATTTTTCCCTTTTGACTGTATTGGCTAAAAGGCCTTGGGCTTTCCGAAGTGGAAGTTGCTTCAAATTATGGCAACTCATGATATATCACTGTTAG 753 0.4462 MAQNADEYAPVSSPSSLQRISSSEFYEAGLIYYLELYQAVLNGDWESASKILEDDPQSLSAPIGTDDSPVLHIAVGLGEARMGFVKKLVEFMPSDKLALQDSDGATALFNAVSAGNIKAVKLLVNKNPSLPNICQLQLLVPLHSALRCAHKELTLYLLTVTRDDVDPSPFADKPGFELLRRALMVGFHDVALYLVKRYPDLATCHFDSARHDDANDSDEDFSLLTVLAKRPWAFRSGSCFKLWQLMIYHC* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0946 250 Pfam Ankyrin repeats (3 copies) 36 127 IPR002110 GO:0005515
Vvi19g0946 250 SMART ANK_2a 103 133 IPR002110 GO:0005515
Vvi19g0946 250 SMART ANK_2a 66 98 IPR002110 GO:0005515
Vvi19g0946 250 SMART ANK_2a 174 203 IPR002110 GO:0005515
Vvi19g0946 250 SMART ANK_2a 137 167 IPR002110 GO:0005515
Vvi19g0946 250 Gene3D - 34 229 IPR036770 -
Vvi19g0946 250 PANTHER - 27 170 - -
Vvi19g0946 250 SUPERFAMILY Ankyrin repeat 36 197 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0946 Vvi-Chr19 11696650 11698110 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0946 36 212 Miscellaneous Gene Families AT1G05640 29.444 2.46e-06 46.2