Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0939 ATGCTTCACATAGCAGTTGAGTTAGGAGAGGCCAGAATGGGTTTCGTGGAGAAGTTGGTTGAGTTTATGCCAAGTGAGGCACTGGCTCTGCGGGATTCTGATGGCGCCACTGCCCTTTTCAACGCTGCAAGGGCTGGCAATATAAAAGCAGTCAAGTTGTTAGTGAACAAAAACCCAAGCTTGCCCAATATCTGCCAACCAGCAATTACCATCCCGGGTGGCAACCATGATGATACTGGCATACCAAATTTCTCCAAAGAAAAGGCCTTCAAAGTTTTTGCAGCTTCGGATGCTCTTTCCCTCTTCCTATCCATTGCTTCGGTGCTGATATGCCTATCCATTCTCACGGCACGATATGCAGAAGATGATTTTCTTTTTGCCCTTCCCAGGAGGTTGATATTTGGCCTTGTTACTCTATTCCTCTCCGTAACATTCATGATGATAGCCTACAGTAGCGCAATCTATCTTCTCTTTGGTGAAAAGAAGGCATGGATTCTTACTACCTTGGCTGCATTAGCCTGTTTGCCGGTGACCTTGTACGGAATTTTGCAGTTTCCCCTCCTTGTGGAATTGATTTATTCCACATACGGCCCAGGCATTTTTGGCAAACATAGTAATAGTCTGATCCGATAG 633 0.4566 MLHIAVELGEARMGFVEKLVEFMPSEALALRDSDGATALFNAARAGNIKAVKLLVNKNPSLPNICQPAITIPGGNHDDTGIPNFSKEKAFKVFAASDALSLFLSIASVLICLSILTARYAEDDFLFALPRRLIFGLVTLFLSVTFMMIAYSSAIYLLFGEKKAWILTTLAALACLPVTLYGILQFPLLVELIYSTYGPGIFGKHSNSLIR* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0939 210 Gene3D - 1 78 IPR036770 -
Vvi19g0939 210 PANTHER CASKIN 67 197 - -
Vvi19g0939 210 Pfam Ankyrin repeats (3 copies) 2 58 IPR002110 GO:0005515
Vvi19g0939 210 SUPERFAMILY Pseudo ankyrin repeat-like 1 62 - -
Vvi19g0939 210 Pfam Domain of unknown function 67 156 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0939 Vvi-Chr19 11442068 11461125 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0939 7 175 Miscellaneous Gene Families AT1G34050 28.000 3.08e-06 45.4