Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0924 ATGTTTCTTCCATTCAGTAGATATTTGTTTTCATTTGTGCTGCTTGTGTTTCTTGTTCGTTTGTGTGATGGAGGTCCTTGGGTTGTAGAAAAGAAAGTGGATCTAAGGATTACCAATGACTTGGGCAGTGGCTTAGATCTTAATCTCCACTGTCAATCCGATGATGATGACCTTGGCACTCATGTCCTGGCCCCTGATCAATTCTTTGAATTCCGTTTTCGGCCAAACTTTTGGGGCACTACCTTATACTTCTGCAAGTTCTGGTGGGGAGGAGAATCCCATTGGTTTAATATATACGTTGAGAAGAGGGATACGAGCCGATGTGATAGCAAGTGCTGGTGGATGGTCGGACCAGTTGGTCCTTGTTTGCTGGATCGTAGATTTGGAATATACGATCTTTGCGAAAACTGGAATGACCCTCAGTTTGAGGGTTCACGTAAAAAAGGGACAGAAAACGACGCAGCTAGAGTGTACAATGACTCCAAATATATGGAGGGCAATGAGAAAAGAGGGAAATGA 519 0.4355 MFLPFSRYLFSFVLLVFLVRLCDGGPWVVEKKVDLRITNDLGSGLDLNLHCQSDDDDLGTHVLAPDQFFEFRFRPNFWGTTLYFCKFWWGGESHWFNIYVEKRDTSRCDSKCWWMVGPVGPCLLDRRFGIYDLCENWNDPQFEGSRKKGTENDAARVYNDSKYMEGNEKRGK* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0924 172 SUPERFAMILY Cupredoxins 30 89 IPR008972 -
Vvi19g0924 172 PANTHER - 29 125 IPR010264 -
Vvi19g0924 172 Pfam Plant self-incompatibility protein S1 35 137 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0924 Vvi-Chr19 10992613 10993131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0924 32 138 Carbohydrate Esterase AT3G16970 40.000 8.91e-24 89.4