Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0923 ATGCTTTTGTGGAATTCAATTTTGAGGGCTAATGTGGCTTATGGGTATTGTGAAGAAGCACTTGAAATTTGTTGTAGAATGCAAAAGCTAGGGGTTTCAGCTGATGTGTTTGCTTTTCCTTTGGTTATAAGGGTTTGCACTTTGATGGGTAGTCGCAAATTGCGTAGGAGCGTTCATGAGCATGTTGTGGAAATGGGGTTTCAGTGGAATCTTCATGTGGGGAATGAATTGATGGGAATGTATGGGAAGATTGGGAGAATGGACAGTGTGCACAAAATGTTTGATAGAATGGCTGTTAGGAGTTGTGTTTCTTGGAATACTATGATTTTGGGTTATGCACTTAGTTATGATTGTCATGGTGCTTCAGAAATGTTTCAAATGATGGGGTTTTATTGA 396 0.3939 MLLWNSILRANVAYGYCEEALEICCRMQKLGVSADVFAFPLVIRVCTLMGSRKLRRSVHEHVVEMGFQWNLHVGNELMGMYGKIGRMDSVHKMFDRMAVRSCVSWNTMILGYALSYDCHGASEMFQMMGFY* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0923 131 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 128 IPR046960 GO:0003723|GO:0009451
Vvi19g0923 131 Pfam PPR repeat 77 101 IPR002885 -
Vvi19g0923 131 Pfam PPR repeat 103 128 IPR002885 -
Vvi19g0923 131 Pfam PPR repeat 4 32 IPR002885 -
Vvi19g0923 131 Gene3D Tetratricopeptide repeat domain 3 130 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0923 Vvi-Chr19 10989481 10989876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0923 1 127 Glycoside Hydrolase AT3G49170 25.385 1.07e-07 47.4