Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0920 ATGGCGTCTTCATCAAGCAGTGGGCTCACATTCAAGCTCCATCCGCTGGTAATTGTTAACATATCGGATCACTACACGAGAGTGAAATCTCAGACTCAACCTCCTCATCTTAGTAGCAATGGAGGCGAGGGAGCTGCAGCGGCCGCATCGCCTCCGCCTCCTCCACCCAGGGTCTTCGGTTGCGTGATTGGGGTCCAGAGAGGACGCACTGTTGAGATCTTTAACAGTTTTGAACTTCTGTATGATCCATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAAGTGATGCCCAAGAATCAGATATGCATATTCATAAAGCTTTGATGGATATTAATGAAAGCCCTGTCTATGTTCTTCTCAATCCGTCAATCAATCATGCACAAAAGGATCTCCCTGTGACTATCTATGAAAGTGAGCTGCATGTCATAGATGGGATTCCACAGCTTATTTTTGTTCGTGCAAACTATACTATTGAGACGGTAGAAGCAGAAAGGATCTCAGTTGATCATGTTGCTCATCTTAAACCATCTGATGGAGGTTCTGCTGCAACTCAATTGGCTGCCCACCTCACGGGGATACATAGTGCCATCAAGATGCTAAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAGGGGATATTCCTTGTGAAAATTCACTGCTGAGACAAGTATCAAGTCTTTTACGGAGATTGCCAGCCATTGAATCAGGGAAGTTTCAAGATGATTTTTTGATGGAATACAATGATACATTATTGATTAGTTACCTTGCCATGTTCACCAACTGCTCAAGTACAATGAATGAGCTGGTCGACAAATTCAACACAGCATATGACAGGCACAGTCGAAGGGGTGGACGAACTGCTTTTATCTGA 954 0.4371 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQTQPPHLSSNGGEGAAAAASPPPPPPRVFGCVIGVQRGRTVEIFNSFELLYDPSTHSLDRSFLEKKQELYKKVFPNFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIDGIPQLIFVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLLAMQKGDIPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0920 317 ProSiteProfiles MPN domain profile. 11 164 IPR037518 -
Vvi19g0920 317 FunFam COP9 signalosome subunit 6 1 198 - -
Vvi19g0920 317 Pfam Maintenance of mitochondrial structure and function 184 298 IPR024969 -
Vvi19g0920 317 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 308 - -
Vvi19g0920 317 CDD MPN_CSN6 9 313 IPR033859 GO:0000338|GO:0008180
Vvi19g0920 317 MobiDBLite consensus disorder prediction 29 53 - -
Vvi19g0920 317 Gene3D Cytidine Deaminase, domain 2 1 198 - -
Vvi19g0920 317 SMART pad1_6 10 163 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi19g0920 317 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 136 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0920 2 268 Eukaryotic Initiation Factors Gene Family AT2G39990 22.426 5.70e-10 57.4