Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1366 ATGTTCTCAACTAGTGATCATCACATGCTTCACTGCCCACCACGGCCATTGCCTTCACTGGACAAGGGGTGGAAATCCAACGCTGAACTTGCACCCAGCTGTCCTCGCTGCTCCTCTCCCAATACCAAGTTTTGTTACTACAACAATTACAGCTTGTCCCAGCCCAGGTACTTCTGTAAGGGCTGCAGAAGGTACTGGACCAAAGGTGGGTCTCTGAGGAACGTTCCGGTGGGTGGCGGGTGCCGCAAGAATCGTCGAGGGAAGGCCGTGAGGGTGCCGCAGTTGGAGCGGGGTTCCGGGAATTATGGCTCTGATGCTCCGCCTAGTGGGGACTCGGTGGTGGTGGTGCCCCCTGGTCGGACGGGTGGGGCGGAGATCGACTTGGCTGTGGTTTTTGCCAAGTTTTTGAATCACAACTCTGGGTTTGAGCCTGAGGTTGCTGGTTCGGCACTGTCTGATCAAACTGATGCAGCTGGGAACGTGTTAGGGGCGTTAAACTCGGACGCCCAGCAAGAAGACATGGCGATGGAGTGCGGGACGTCGTTGGATCTAATGGGAGAAGTCCAGTTGCTTGAAGGCCACACACAGTTGTTTGATGGAGGAGAGAAGCAAATACAAGAAGAGAGAATTCAAGAGTTCACTAGTCATGATGATGCCAGTGCATACGGGCTGCCGACTCTACTGAGCGATGAAGCAGCACAAGAGGTTTTATGGTCAGATGCTCAGACTCTGCAAAACTTTACATGGCAGCCAGTGATGCAGTTGCAAGAATTCGAATCAGTTCCATCCTATGATCATTCCAAAATGTCTCCAAATTTAATAGGCGAATTTTGGAGTTCTTTTTGA 846 0.5177 MFSTSDHHMLHCPPRPLPSLDKGWKSNAELAPSCPRCSSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKAVRVPQLERGSGNYGSDAPPSGDSVVVVPPGRTGGAEIDLAVVFAKFLNHNSGFEPEVAGSALSDQTDAAGNVLGALNSDAQQEDMAMECGTSLDLMGEVQLLEGHTQLFDGGEKQIQEERIQEFTSHDDASAYGLPTLLSDEAAQEVLWSDAQTLQNFTWQPVMQLQEFESVPSYDHSKMSPNLIGEFWSSF* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1366 281 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 180 IPR045174 GO:0003700|GO:0006355
Vvi18g1366 281 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Vvi18g1366 281 Pfam Dof domain, zinc finger 33 86 IPR003851 GO:0003677|GO:0006355
Vvi18g1366 281 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1366 Vvi-Chr18 13865580 13866425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1366 25 281 C2C2-Dof Transcription Factor Family AT3G52440 40.152 1.99e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi18g1366 zf-Dof 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1366 - - vvi:100242094 582.022