Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0939 ATGCCATCAGAGTCCGGGGAGAGGCGCGTTGCGAGACCCCAACAAGTGGGTGGGCATCCGCCGCAGTCTGAGCACCTTCCATGTCCCCGCTGCGACTCTACCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCTCGCCACTTCTGCAAATCCTGTCGCCGCTATTGGACCCAGGGAGGCACTCTCAGGAACATCCCCGTTGGTGGTGGTACTCGCAAGAACTCCAAGCGTTCTCGCACTGCTACTTCTTCCTCTTCATCTACCCTAGAAACGACGCCCGCCAACCCCATTTCCGTCTCGCCAGTCCTGAAAGCCGAAACGGAGACGCCGCAACGGAATGGATTGAGTCTGAATGGGGATGTGTCTGGGGGTTTCACCTCACTGCTCAACTCTCAGGGACCTGGGTTCCTTGCGCTGAATGGGTTCAGCCTAGGGCTTGGACCAGGGTTCGATGAAATGGGGTTCGGACCTGCGAAAGGGGTTTGGTCTTATCCAGATGTCGGTGATGTTGTTCTTGGTGGCGATGGCACTGGCAGCGGCGGTGGTTCGGCGTCGTCTTCTATATGCAACACGTGGCAGCTAAGCGGCGGGGAAGTCGGATTCGTTGATGGAGATTGCTTTGCTTGGCCAGACCTCGCGATTTCCACGCCTGGACAAGGTTTGAAGTGA 681 0.5683 MPSESGERRVARPQQVGGHPPQSEHLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNIPVGGGTRKNSKRSRTATSSSSSTLETTPANPISVSPVLKAETETPQRNGLSLNGDVSGGFTSLLNSQGPGFLALNGFSLGLGPGFDEMGFGPAKGVWSYPDVGDVVLGGDGTGSGGGSASSSICNTWQLSGGEVGFVDGDCFAWPDLAISTPGQGLK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0939 226 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Vvi18g0939 226 Pfam Dof domain, zinc finger 25 80 IPR003851 GO:0003677|GO:0006355
Vvi18g0939 226 MobiDBLite consensus disorder prediction 75 121 - -
Vvi18g0939 226 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g0939 226 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Vvi18g0939 226 MobiDBLite consensus disorder prediction 70 121 - -
Vvi18g0939 226 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 136 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0939 Vvi-Chr18 9622416 9623096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0939 1 226 C2C2-Dof Transcription Factor Family AT3G50410 45.098 3.01e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi18g0939 zf-Dof 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0939 - - vvi:100254056 421.779