Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0310 ATGTTTAACCAAAGCACACTGTCTGGGCTCTTCGTTCTCTTCTTCTTGGTCTTGAGCAATGTGGACGTCGTGAGATCCAAATCCACCATCGAGCCATGCTCGAACTCCGACTCATGCAACGCCATGGTGGGTTACACGCTCTACACCGACCTTAAGGTCTCGGAAGTGGCGACCCTATTCCAAGTCGACCCCATTGCTATTCTCACCGCCAACGCCATTGACATTTCGTATCCGGATGTTGAGAATCACATCCTTCCCTCCCAGCTCTTCCTCAAAATCCCCATTTACTGCTCCTGCGTCGACGGAATCAGAAAATCAGTCACCACACGGTACAAGACTCGCCCCTCCGATACTCTCTCATCGATTGCCGATTCGATTTACGCGGGTCTTGTGTCCGCGGATCAGCTCAGGGAGGCGAATTCGATATCGGATCCTTCGGTTCTGGATGTGGGGCAGACCCTTGTGGTTCCGCTTCCTTGTACTTGCTTCAATGGGACTGATAATTTGTTGCCGGCCACTTATTTATCGTATGTGGTGAAAGTTGATGACACATTGACAGGCATTGCTTCCAGGTATTCGACTACTATTTCTGATCTAATGACTGTGAATGCAATGGGGAGTCCAGCAATTAAGGCTGGTGATATACTTGCTGTTCCTTTGCCAGCTTGTGCATCTAATTTTCCAAAATATGCTTCGGACTATGGGCTAGCTGTGCCAAATGGGAGTTATGCTATCACTGCAAGTCACTGTGTACAATGCAGTTGTGGGCCAGGAAGTCTCAATTTATACTGCATGCCAGCATCTTTGGCAGTCTCTTGTTCAAGTATGCAATGCAGGAATACTAACCTTATGCTCGGGAATGTTACAATGCAAAAGAGTAGTGCTGGCTGCAATGTTACATCTTGTAGCTATGGTGGTTTTGTCAATGGCACCATTATTGCTACGCTGACCACATCCCTTCAACCTCGATGTCCAGGGATCCAGCAATTTCCTCCACTTATAGCACCACCATCTTCAGTAATCAGGGATTCATTCTATGCCCCATCACCTTCTCCATCTCAGTCAGATGGTGCTGGAACAACAATTCCTAGTCCTTCGGTGGTGCCTTCAACAGGGTCAATTCCAGGTTTTGCTCCCGCCAATGGCCCAACTGGAAGTGCCTCTGATGCTAGCTCTTTGGTGAACCCCTTAGCCAGTTTCCCTGTTGTGATTGCCTTATGTTTGTTTTTCAAGTTAATGGTCTCGTCCTTTTTATAA 1257 0.4765 MFNQSTLSGLFVLFFLVLSNVDVVRSKSTIEPCSNSDSCNAMVGYTLYTDLKVSEVATLFQVDPIAILTANAIDISYPDVENHILPSQLFLKIPIYCSCVDGIRKSVTTRYKTRPSDTLSSIADSIYAGLVSADQLREANSISDPSVLDVGQTLVVPLPCTCFNGTDNLLPATYLSYVVKVDDTLTGIASRYSTTISDLMTVNAMGSPAIKAGDILAVPLPACASNFPKYASDYGLAVPNGSYAITASHCVQCSCGPGSLNLYCMPASLAVSCSSMQCRNTNLMLGNVTMQKSSAGCNVTSCSYGGFVNGTIIATLTTSLQPRCPGIQQFPPLIAPPSSVIRDSFYAPSPSPSQSDGAGTTIPSPSVVPSTGSIPGFAPANGPTGSASDASSLVNPLASFPVVIALCLFFKLMVSSFL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0310 418 Gene3D LysM domain 105 166 IPR036779 -
Vvi18g0310 418 CDD LysM 176 218 IPR018392 -
Vvi18g0310 418 Gene3D LysM domain 168 227 IPR036779 -
Vvi18g0310 418 SUPERFAMILY LysM domain 109 158 IPR036779 -
Vvi18g0310 418 SMART LysM_2 176 219 IPR018392 -
Vvi18g0310 418 SMART LysM_2 110 157 IPR018392 -
Vvi18g0310 418 Pfam LysM domain 177 219 IPR018392 -
Vvi18g0310 418 Pfam LysM domain 111 157 IPR018392 -
Vvi18g0310 418 MobiDBLite consensus disorder prediction 346 365 - -
Vvi18g0310 418 ProSiteProfiles LysM domain profile. 175 218 IPR018392 -
Vvi18g0310 418 CDD LysM 109 156 IPR018392 -
Vvi18g0310 418 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Vvi18g0310 418 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 326 - -
Vvi18g0310 418 SUPERFAMILY LysM domain 175 220 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0310 Vvi-Chr18 3098338 3100741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0310 10 392 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.688 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0310 - - vvi:100253893 818.535