Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0263 ATGGGAAGCCTGGAGCATCAAGTGGGTAACACAGGAAGCAAACGGATTGCTGCCTTGGACACCCCACCACCTCCATCACGCAGTCATGCTGCTCATCATCTTGATTTAGATGACCAGAAACCCGGGTGGAGAAAGTTTCTGGCCTTTGTTGGCCCTGGTTTTCTTGTCTCATTGGCGTATCTCGACCCTGGAAACTTGGAAACTGATCTGCAAGCAGGAGCTAATCATGGGTTTGAGCTACTATGGGTGGTGCTCATAGGATTGATTTTCGCTCTCATAATCCAATCCCTCGCTGCAAATCTCGGTGTAAGCACAGGGAAGCATCTTTCAGAGCTCTGCAAGGCCGAATACCCCATAATTGTCAAGTATTGCCTGTGGTTATTAGCTGAGATTGCTGTCATTGCTGCCGATATTCCCGAAGTGATAGGGACAGCCTTTGCACTGAATATACTTTTCAAGGTCCCCGTGTGGGCTGGGGTTCTCTTCACTGGCTTCAGCACTCTCCTGCTTCTTGGCCTGCAAAGATATGGGGTGAGGAAGTTAGAATTGTTGATAGCAGTGCTGGTATTCATAATGGCTGGTTGTTTCTTTGGAGAAATGAGTTATGTGAAGCCTCCAGCCACAGGTGTTTTAAAGGGCATGTTCATTCCCAAGCTCAAAGGCCAGGGTGCCACCGGTGATGCCATTGCCCTCTTGGGTGCTCTTGTTATGCCCCATAATCTCTTCCTCCATTCTGCACTTGTACTTTCTAGGAAGGTGCCCAACTCAGTCCGTGGCATCAATGAGGCATGTCGATATTTCTTGATAGAGAGTGGATTGGCATTATTCGTAGCATTTTTAATCAATGTTGCAGTTGTTTCCGTGTCGGGTACTGTTTGTTCTGCTGACAATCTTTCACAAGAAAACTTGGATCAGTGCAATGATCTTAATCTTAATTCTGCTTCTTTCCTCCTCAAGAATGTGTTGGGAGGGTCAAGCAAGGTGGTCTATGCCATTGCACTGTTTGCCTCAGGCCAAAGTTCCACCATCACAGGCACTTATGCTGGACAATTTATCATGCAGGGTTTCTTGGATATTAAAATGAGGAAATGGCTGAGGAACCTGATGACTAGAAGCATTGCCATTACACCTAGTCTCATTGTCTCCATTATTGGTGGATCTGCTGGTGCCGGCCGACTCATTATCATTGCATCAATGATTCTCTCATTTGAACTTCCATTTGCGCTGATCCCACTCCTGAAATTTAGTAGCAGTAACACCAAGATGGGCCCTCATAAGAATTCAATATACATCATAGTAATTTCGTGGATCCTGGGATTCGGAATCATCGGCATCAATATTTATTACCTATCCACCAGCTTCGTAGGTTGGCTGCTTCACAATAATCTCCCCAAGGTGGGAAATGTGTTCATTGGGATCATAGTATTTCCCCTCATGGCTATATATATCCTCTCAGTCATCTATCTCACCACCCGGAAAGACACTGTGGTGACATTCATCGAACCAGAAAAGAATGATCCGAATGTCCAAAATCATATGGAAAATGGGTTCGACCAGACTGATGGAGTGTTCGAATTAGGCCATGTTCCATATAGGGAGGATCTTGCTGACATCCCATTACCAAAGTAA 1629 0.4555 MGSLEHQVGNTGSKRIAALDTPPPPSRSHAAHHLDLDDQKPGWRKFLAFVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEVIGTAFALNILFKVPVWAGVLFTGFSTLLLLGLQRYGVRKLELLIAVLVFIMAGCFFGEMSYVKPPATGVLKGMFIPKLKGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINEACRYFLIESGLALFVAFLINVAVVSVSGTVCSADNLSQENLDQCNDLNLNSASFLLKNVLGGSSKVVYAIALFASGQSSTITGTYAGQFIMQGFLDIKMRKWLRNLMTRSIAITPSLIVSIIGGSAGAGRLIIIASMILSFELPFALIPLLKFSSSNTKMGPHKNSIYIIVISWILGFGIIGINIYYLSTSFVGWLLHNNLPKVGNVFIGIIVFPLMAIYILSVIYLTTRKDTVVTFIEPEKNDPNVQNHMENGFDQTDGVFELGHVPYREDLADIPLPK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0263 542 PRINTS Natural resistance-associated macrophage protein signature 338 357 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 PRINTS Natural resistance-associated macrophage protein signature 366 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 PRINTS Natural resistance-associated macrophage protein signature 153 172 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 PRINTS Natural resistance-associated macrophage protein signature 398 417 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 PRINTS Natural resistance-associated macrophage protein signature 125 151 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 PRINTS Natural resistance-associated macrophage protein signature 228 251 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 PRINTS Natural resistance-associated macrophage protein signature 178 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 MobiDBLite consensus disorder prediction 1 33 - -
Vvi18g0263 542 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 38 497 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 Pfam Natural resistance-associated macrophage protein 67 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 NCBIfam Nramp family divalent metal transporter 51 417 - -
Vvi18g0263 542 Hamap Divalent metal cation transporter MntH [mntH]. 32 454 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g0263 542 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 44 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0263 Vvi-Chr18 2513739 2517437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0263 39 542 Inorganic Solute Cotransporters AT1G15960 60.714 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0263 K21398 - vvi:100266052 1036.17