Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0822 ATGGGTCTAACTTTTCTACCAGTTTGCATGGATTCATCTGAGTGGCTACAGGGAACGGCTCACGAGGAGAATGGAATGGACTCTTCTTCACCTTCCGGAGACATGCTCACTTGCTCCAGACCTTTGATAGAGAGGAGGCTGAGGCCACAGCATGACCAAGCTCTCAAGTGCCCAAGGTGTGACTCGACACACACCAAGTTTTGCTATTACAACAATTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACTAAAGGGGGCACCCTCAGGAACATCCCTGTGGGTGGTGGGTGCCGAAAGAACAAGAAGGTTGCATCCAAGAAATCAAATGATCATTCAATTAACCAGAACCCGGGACCTTCCTCACATAATCCCACTGATCTTCACCTCTCATTTCCTGAGGTGCAGTTTTCTCACCTCTCCAACTTACTTGGGAGCCATGGGGGCCTTGGAAATCATAGTTTCATGGAGAGCAAGTACAATGGTATGCTTGAAAATGCTAGACCAATTGATTTTATGGAAGGTAAGTTTGAAGCTATAGTCGGAAGTTCCAGGAACCATGATTTTATGGGGAATTGTGAGTTGGGTATGGGTGGACTTGGAGATATGAGTCATGGTGGGTTAGCACCAAATTTTCATGGCCTTTGCTCTCCTTTTGGGGTCACCCTTGATGGAAACGGTGGAAATTTCATGGACACTTGCCAGAGGTTAATGCTACCATATGAGGGAAACGTGGAACAAAATGCAATGGACGTGAAGCCAAATACCAAGCTCCTGTCCCTTGACTGGCAAGATCAAGGTTGTTCTGATGCTGGGAAGGACTCATTTGTGTATCTCAACAGCCTTGGTTCATGGAACGGCATGATGAGCAATGGTTACGGGCCATCAACCACAAACCCACTAGTCTAA 927 0.4682 MGLTFLPVCMDSSEWLQGTAHEENGMDSSSPSGDMLTCSRPLIERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVASKKSNDHSINQNPGPSSHNPTDLHLSFPEVQFSHLSNLLGSHGGLGNHSFMESKYNGMLENARPIDFMEGKFEAIVGSSRNHDFMGNCELGMGGLGDMSHGGLAPNFHGLCSPFGVTLDGNGGNFMDTCQRLMLPYEGNVEQNAMDVKPNTKLLSLDWQDQGCSDAGKDSFVYLNSLGSWNGMMSNGYGPSTTNPLV* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0822 308 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 144 IPR045174 GO:0003700|GO:0006355
Vvi17g0822 308 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Vvi17g0822 308 MobiDBLite consensus disorder prediction 106 134 - -
Vvi17g0822 308 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Vvi17g0822 308 MobiDBLite consensus disorder prediction 116 134 - -
Vvi17g0822 308 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0822 Vvi-Chr17 9361323 9362749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0822 1 308 C2C2-Dof Transcription Factor Family AT5G62940 43.467 2.68e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi17g0822 zf-Dof 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0822 - - vvi:100265549 640.188