Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0619 ATGCAGGAGCCCAAGGACCCCGCGTTTAAGCTCTTTGGCAAAACCATACCCATGCTAGCGGACGGCGATGCTCCGGTCAGCTCAGGTGATGTTGGAGACTCTGGCGCTGCTGTTGCCCGTGAAGATGGTCTTGAAGAAGAAACTGAGAAGGATGCCCTGGGAGGAAAACCTGCTGAGACCAAAGGAGAAGATGGTTCAGAGGAGTCAAGGAATTCAGAAACAGTGGCAGAGAGCAATGAGAACCCTAAAACACCCTCTATTGCTGAAGAAAATGTAACACTAAAAACTTCCAAGGCGGAAAAAGGACAAAGTGATAGTCCTGATTCTCAAGAGAAAACCCTGAAGAAGCCAGACAAAATCCTTCCATGCCCCCGCTGTAATAGCATGGACACAAAGTTCTGTTATTACAACAATTACAACATTAACCAACCCCGTCACTTCTGCAAAAGCTGCCAGAGGTATTGGACTGCTGGGGGTACCATGAGGAATGTTCCAGTGGGAGCTGGCCGTCGAAAGAACAAGAATTCTGCCTCGCATTATCGACATATCACCATCTCTGAAGCACTCCAAACTGTTCGAATTGAGGCTACTAATGGGGTGCACCAACCAACTTTGAAAAGCAATGGCACAGTACTGACTTTTGGCTCGGATGCACCCTTTTGTGATTCCATGACTTCTGTTTTAAATCTTGAGGAGAAAAAGATGCCTAATGGGGCCCGAAACGGGTTTCATACACACGAAGAACAGGGAATTCCAGTTTCTTTCAGAGTTCAGGAAAATGGTGATGATCACTCTAGTGCATCTTCTATCACCGTTTCAAATTCATCGGAGGAAGGAAGCAAGTATGGGCTACATGAGGCAAAGCGAAATTCCCATGGTGTACCTTCTCGAATTCCATGTATCCCTGGGATTCCCTGGCCTTATCCTTGGAATTCTGCAGTGCCTCCACCTTTCTGTCCTCCAGGTTTTCCTATGCCATTCTATCCTGCAGCCTATTGGAATTGTCATGTTACGGCCCCTTGGAACATTCCTTGGTTGTCTCCACCATCTTCTTCTGCAAACCAAAAGACTCCAAACTCCAGACAAAATTCTCCAACCTTAGGGAAGCATTCAAGGGAAGGGGACATTCTTAAACCAAGCATTGTGGAGGATGAAGAGACCCCAAAACAGAGGAGTTCAGAGAGATGCCTCTGGGTTCCAAAGACCTTGAGAATTGATGATCCTGCTGAAGCTGCAAAGAGTTCCATATGGACAACGCTCGGGATTAAGAATGACAAGGTTGATTCAGTCAGCGGAGGAGGGCTCTTCAATGCCTTCCACTTGAAGGGTGATGATAAAAATCATGCTATTGACACCTCTGCCGTGTTGCGGGCTAACCCTGCAGCCTTGTCTCGGTCACTCAACTTCCAAGAGAGCTCTTAA 1422 0.4712 MQEPKDPAFKLFGKTIPMLADGDAPVSSGDVGDSGAAVAREDGLEEETEKDALGGKPAETKGEDGSEESRNSETVAESNENPKTPSIAEENVTLKTSKAEKGQSDSPDSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQTVRIEATNGVHQPTLKSNGTVLTFGSDAPFCDSMTSVLNLEEKKMPNGARNGFHTHEEQGIPVSFRVQENGDDHSSASSITVSNSSEEGSKYGLHEAKRNSHGVPSRIPCIPGIPWPYPWNSAVPPPFCPPGFPMPFYPAAYWNCHVTAPWNIPWLSPPSSSANQKTPNSRQNSPTLGKHSREGDILKPSIVEDEETPKQRSSERCLWVPKTLRIDDPAEAAKSSIWTTLGIKNDKVDSVSGGGLFNAFHLKGDDKNHAIDTSAVLRANPAALSRSLNFQESS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0619 473 MobiDBLite consensus disorder prediction 350 393 - -
Vvi17g0619 473 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Vvi17g0619 473 MobiDBLite consensus disorder prediction 39 74 - -
Vvi17g0619 473 MobiDBLite consensus disorder prediction 75 100 - -
Vvi17g0619 473 MobiDBLite consensus disorder prediction 371 392 - -
Vvi17g0619 473 MobiDBLite consensus disorder prediction 18 121 - -
Vvi17g0619 473 MobiDBLite consensus disorder prediction 101 119 - -
Vvi17g0619 473 MobiDBLite consensus disorder prediction 258 295 - -
Vvi17g0619 473 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Vvi17g0619 473 PANTHER CYCLIC DOF FACTOR 2 1 473 IPR045174 GO:0003700|GO:0006355
Vvi17g0619 473 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Vvi17g0619 473 MobiDBLite consensus disorder prediction 259 280 - -
Vvi17g0619 473 MobiDBLite consensus disorder prediction 350 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0619 Vvi-Chr17 6845995 6848523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0619 1 471 C2C2-Dof Transcription Factor Family AT3G47500 46.371 8.60e-114 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi17g0619 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0619 - - vvi:100257057 953.74