Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0351 ATGAGAGATCAATTCCACCGTCTTCTTCTTCTTCTTCTTCTTCATCTTTCTTTACTTTCTTTACTTTCTTTTGGTTCCATAACGCAAGCAAAGTCTGTAATTGAACCGTGCAGTTCTTCAGACTCCTGCAACTCTCTTCTCTCCTATCTTCTTCCTTGGGACTCCAAGCTCTCTGAGATTGCATCACGCTTCCAAGTCAACATCTCTGATATCTTGGCTACCAACTCCATGGACCCAACAAGGCCATCCTCTGCAAGCCAAATCATCCCTGCAAAATCACTCGTGAAAGTCCCCATCCTGTGTCCTTGTGTGGACGGCATTCGCCGTTCTCTGTCCACTACTTACACAGTCAAAGCGGCTGACACGATGGATTTAATATCAGAGGGGTACGGGGGGCTTGTGAGTGCAGATCAGATAAGAAGCGTTAATGGAGGAAAAGGGGCTGGGTATGGGCAGAGCCTTGTGATTCCATTGCCATGCACATGTTTTGGTAACACAAACAACGGTGCGACTGCTGTGTACATGTCATATGTGGTACAGAGAGGGGAGAGCTTGGGCAGCATTGGAGCTCGATATCATACTACTGTCACTGACTTGGCCGCGGTTAACGGCCTCGGCCAACCGGTGATCAACCCCGGAGACATTCTGGCTATCCCAATACCAGCATGTTCATCAGCAAATCTCAGGTGGTACAACGAAAGCCTAATAGTTGCAAATGGCTCCTATGCTCTCACTGCCAATAACTGCATCAGATGTAGCTGCACACCCACTCATCTCAACCTGCAATGCTTTCCATCTGGGATCATGGTCGCCTGCAATCGTTTACAGTGCAAAGCATCCCATCTCTTCATAGGCGATGTGGTTGTCACCAAAACTCCTGCTGGGTGCAACATCACCACTTGTGTGTACCGTGGCCATGGCGGTCGGAAAATTTTCAGAAGCTTGGTAAATTCTTCTCATGTTAATTGCTCAGGTAATGAGAGTTACTGGGAGACATCGCCCATGGCATCCCCGTCTCCGGAAACCATGTTCCCATCCATATCATTGTCTCCATCTCCATCTCCATTTTCGGCTCCATCCCCGTTTTCAGTTTTTGGTGCAGGGACTGCATCCGATTCTAGAAGTAACCAAACCTCTAATTCTTCTAGTGGAGTGTTTCTTAGTCTAAGTATTTCGTGCTTTAGTTTGTTGATTTTACAACTTGTCACTTTATTTATTTTGAAATGA 1227 0.467 MRDQFHRLLLLLLLHLSLLSLLSFGSITQAKSVIEPCSSSDSCNSLLSYLLPWDSKLSEIASRFQVNISDILATNSMDPTRPSSASQIIPAKSLVKVPILCPCVDGIRRSLSTTYTVKAADTMDLISEGYGGLVSADQIRSVNGGKGAGYGQSLVIPLPCTCFGNTNNGATAVYMSYVVQRGESLGSIGARYHTTVTDLAAVNGLGQPVINPGDILAIPIPACSSANLRWYNESLIVANGSYALTANNCIRCSCTPTHLNLQCFPSGIMVACNRLQCKASHLFIGDVVVTKTPAGCNITTCVYRGHGGRKIFRSLVNSSHVNCSGNESYWETSPMASPSPETMFPSISLSPSPSPFSAPSPFSVFGAGTASDSRSNQTSNSSSGVFLSLSISCFSLLILQLVTLFILK* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0351 408 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 9 326 - -
Vvi17g0351 408 CDD LysM 176 218 IPR018392 -
Vvi17g0351 408 SUPERFAMILY LysM domain 175 220 IPR036779 -
Vvi17g0351 408 Gene3D LysM domain 161 227 IPR036779 -
Vvi17g0351 408 ProSiteProfiles LysM domain profile. 175 218 IPR018392 -
Vvi17g0351 408 Pfam LysM domain 57 80 IPR018392 -
Vvi17g0351 408 Pfam LysM domain 177 219 IPR018392 -
Vvi17g0351 408 Pfam LysM domain 115 157 IPR018392 -
Vvi17g0351 408 SMART LysM_2 114 157 IPR018392 -
Vvi17g0351 408 SMART LysM_2 176 219 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0351 Vvi-Chr17 3690450 3693953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0351 6 359 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 44.722 5.44e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0351 - - vvi:100247526 721.85