Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1311 ATGGACACAGCTCAGTGGCCACAGGGGATTGGAGTGGTTAAACCCATGGAAAGCTCAGGGCCTGTGGCTGAGAGGAGGGCAAGGCCACAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACCAATACAAAGTTCTGTTACTATAACAACTACAGTCTCTCACAGCCTAGATACTTCTGCAAAACTTGTAGAAGGTATTGGACAGAGGGTGGTTCTCTCAGAAATGTTCCAGTTGGTGGCGGTTCAAGGAAGAACAAGAGGTCAACTTCTTCTTCTTCTTCATCATCATCACCAGCTTCTTCAAAAAAATTGCTTCCTGATCATCTTATCACTAGTACTCCTCCAGGGTTTCCATCATCTGCTTCTCAAAACCCTAAGATCCATGAAGGCCAAGATCTCAACCTAGCTTTCCCACCTCCTCCTGAGGATTACAACAACAGCATATCTGAATTTGCTGATTTGTCCTACAATGGTGACAGCAAACCCCACCTCCAAAACCCTACCCCATCTTCATCTTCATCCCATCATCACCTCTCAGCCATGGAGCTGCTCAAGAGTACTGGGATTGCTTCCAGGGGACTGGGTTCTTTCATGCCCATGTCGGTTTCTGATTCAAATTCAATTTACTCATCTGGGTTTCCTCTGCAGGAGTTCAAACCAACTCTTAATTTTTCTCTGGATGGGTTTCAAAGTGGGTATGGGAGTCTGCAAGGAGTTCAGGAGAGTGGTGCAAGGCTGTTGTTCCCACTTGAGGATTTGAAGCAAGTTTCAAACACCACTGAGTTTGAGCAAAGTAGAGGAGTTCAAGGAGACTCAGCTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 864 0.4606 MDTAQWPQGIGVVKPMESSGPVAERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSSSSSSPASSKKLLPDHLITSTPPGFPSSASQNPKIHEGQDLNLAFPPPPEDYNNSISEFADLSYNGDSKPHLQNPTPSSSSSHHHLSAMELLKSTGIASRGLGSFMPMSVSDSNSIYSSGFPLQEFKPTLNFSLDGFQSGYGSLQGVQESGARLLFPLEDLKQVSNTTEFEQSRGVQGDSAGYWNGMLGGGSW* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1311 287 MobiDBLite consensus disorder prediction 157 179 - -
Vvi16g1311 287 Pfam Dof domain, zinc finger 32 89 IPR003851 GO:0003677|GO:0006355
Vvi16g1311 287 MobiDBLite consensus disorder prediction 74 144 - -
Vvi16g1311 287 MobiDBLite consensus disorder prediction 1 32 - -
Vvi16g1311 287 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Vvi16g1311 287 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Vvi16g1311 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 178 IPR045174 GO:0003700|GO:0006355
Vvi16g1311 287 MobiDBLite consensus disorder prediction 84 104 - -
Vvi16g1311 287 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1311 Vvi-Chr16 21636455 21637866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1311 1 287 C2C2-Dof Transcription Factor Family AT4G24060 42.197 8.79e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi16g1311 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1311 - - vvi:100264143 574.704