Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0863 ATGGAAGAGGCGATATCGATTTCGATAAACTCTGATCATACTTGTTCTAAGCCTGTGTTGGAGAGGAAGGCAAGGCCCCAGAAGGATCAGGCTGTGAATTGTCCAAGATGTAGCTCAACCAACACCAAGTTCTGTTACTACAACAACTATAGTCTCACTCAGCCAAGGTACTTCTGCAAAACTTGTAGAAGGTATTGGACTGAAGGAGGAACTCTGAGGAATGTCCCTGTTGGAGGAGGTTCAAGGAAGAACAAGAGATCTATTACTACTTCTTCTTCTTTATCTTCTTCATTGACATCTTCATCCTCATTCAAAACCCATCTTCCTGATCTGAACCCTCCAATTCTCTCCCACTTTTCCTCTGAAAACCCTAGGATCCATGAACCCCATGATCTCAACTTGGCTTTTCCACTTCCACAGTACTACCATGGCATCTCTCAGTTTGCTGAAGTGCCCAAAATCGAGAACAACAACTGCTCTTCTTCTTCCTCTTCTTCTTCTTCCTCCACTTTATCTCATCTTTCAGCCTTGGAGCTTCTCAAGACTGGGATCACTTCCAGGGGGTTGAGTTCCTTTGTCCCAGCACCGATGCCGGATTCATCAAGCACCCTATTCACATCAGGGTTTCCTCTGCAAGAATTCAAAGTACCCCACCTCAGTTTTTCTGCTCATCTACATGGGGTTGATCCTCAGCAGAATATGAGTACTACCGGAAGGGTTTTGTTTCCTTTTGGAGAAGTGAAACAGCTCCCAGCCACAACAAGCACTGGAGTTGATCATGATTGTAGTGGTAATAATAAGGGACAAGGGAGTCCAGCTACTGCTGCATACTGGAATAATGGCATGTTTGGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGATCATGGTAG 900 0.4567 MEEAISISINSDHTCSKPVLERKARPQKDQAVNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRSITTSSSLSSSLTSSSSFKTHLPDLNPPILSHFSSENPRIHEPHDLNLAFPLPQYYHGISQFAEVPKIENNNCSSSSSSSSSSTLSHLSALELLKTGITSRGLSSFVPAPMPDSSSTLFTSGFPLQEFKVPHLSFSAHLHGVDPQQNMSTTGRVLFPFGEVKQLPATTSTGVDHDCSGNNKGQGSPATAAYWNNGMFGGGGGRGGGGGGGGSW* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0863 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 166 IPR045174 GO:0003700|GO:0006355
Vvi15g0863 299 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Vvi15g0863 299 MobiDBLite consensus disorder prediction 83 103 - -
Vvi15g0863 299 Pfam Dof domain, zinc finger 29 86 IPR003851 GO:0003677|GO:0006355
Vvi15g0863 299 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Vvi15g0863 299 MobiDBLite consensus disorder prediction 76 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0863 Vvi-Chr15 17188964 17189863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0863 22 288 C2C2-Dof Transcription Factor Family AT3G61850 52.431 1.19e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi15g0863 zf-Dof 3.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0863 - - vvi:100263781 550.821