Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0543 ATGAGTCAGTGCGTGCCCAGCTGGGATATCGATGACAACCCCACCCCTCCAAGGCTCTTTCTCCGTTCTCACTCCAATTCTACTGCTCCAGATGTTCCCATGTTAGACTATGAAGTAGCAGAGCTGACATGGGAGAATGGTCAGTTGGCCATGCACGGCTTGGGTCAGCCGCGGGTGCCGGCGAAACCGGTGGCTTCCGCCGCAGTATCCAAGTACCCGTGGGAGAAGCCACGCGCCGGGGGGACTCTGGAGTCCATAGTGAATCAAGCCACTCGGTTGCCCCACCACAAGCCACCACCGGAAGGCGCCAACGATGATCTCGTGCCGTGGTTAGACCACCAGCGCGCCGTCGCGGCTGCAGCAGCTGCCGCCTCGGTCGCCATGACCATGGACGCCTTGGTCCCCTGCTCCAACAACAATAACACCACTAATAACAACAACCCGTCGCACGTGATGGACTCCGTGCCGGCGGGGCTAGGCCCGTGTGGGGGGGGCAGCTCCACTCGCGTCGGCTCCTGCAGCGGCGGCGCTACCAAAGATGACGACGCCATCCTCCCGGGGAAGCGCGAGAGAGTGGCGCGTGTGCCCTCCACCCACGACTGGAGCAGCCGAGACCAGAGCGTCACCGGCAGCGCCACTTTCGACCTTGATAGCCAACAGGTGACTCTCGACACGTGCGATCTGGGGTCTCCGGAAAACACAAGCTCCGGCAAGCCTTGCACGAAGACGATCACCGTCGATGACCACGACTCCGTTTGTCACAGCCGACCACAGAGAAGGGCAGGTGATGAAGAGGACAAGAAGAGAGGAACAGGAAAATCCTCGGTCTCCAGCAAAAGGAGTAGGGCAGCTGCCATCCATAATCAATCTGAACGTAAAAGAAGAGATAAGATCAATCAAAGAATGAAGACATTACAAAAACTGGTTCCCAACTCGAGTAAGACAGATAAAGCTTCAATGCTTGATGAAGTGATTGAATACCTGAAACAATTGCAAGCCCAAGTTCAGATGATGAATAGAATGAACATGTCACCCATGATGATGCCGATGACCCTGCAGCAGCAACTTCAAATGTCACTGATGGCTCAGATGGGCATGGGAATGGGGATGAGCCCAATGGGAATGGGCGTTGTGGATATGAACACCATCGCTCGACCCAACGTCGCCACCACCGGCATCTCTCCTCTCCTCCACCCCACTCCTTTCCTCCCTTTAACTTCATGGGATGTCTCCGGTGACCGCTTACCTGCTGCGCCAACAATGGTGCCTGACCCTTTGGCCGCATTCCTTGCTTGCCAATCCCAACCAATGACGATGGATGCTTATAGTAGGATGGCAGCCTTGTACCAACACCTGCATCAGCATCCAGCCTCTAGCGCCAGGAGCCAAGGGCTATGA 1398 0.5644 MSQCVPSWDIDDNPTPPRLFLRSHSNSTAPDVPMLDYEVAELTWENGQLAMHGLGQPRVPAKPVASAAVSKYPWEKPRAGGTLESIVNQATRLPHHKPPPEGANDDLVPWLDHQRAVAAAAAAASVAMTMDALVPCSNNNNTTNNNNPSHVMDSVPAGLGPCGGGSSTRVGSCSGGATKDDDAILPGKRERVARVPSTHDWSSRDQSVTGSATFDLDSQQVTLDTCDLGSPENTSSGKPCTKTITVDDHDSVCHSRPQRRAGDEEDKKRGTGKSSVSSKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRMNMSPMMMPMTLQQQLQMSLMAQMGMGMGMSPMGMGVVDMNTIARPNVATTGISPLLHPTPFLPLTSWDVSGDRLPAAPTMVPDPLAAFLACQSQPMTMDAYSRMAALYQHLHQHPASSARSQGL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0543 465 MobiDBLite consensus disorder prediction 182 198 - -
Vvi15g0543 465 FunFam transcription factor UNE10 isoform X1 277 342 - -
Vvi15g0543 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 350 IPR036638 GO:0046983
Vvi15g0543 465 MobiDBLite consensus disorder prediction 243 273 - -
Vvi15g0543 465 MobiDBLite consensus disorder prediction 285 299 - -
Vvi15g0543 465 Coils Coil 288 308 - -
Vvi15g0543 465 Gene3D - 277 343 IPR036638 GO:0046983
Vvi15g0543 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
Vvi15g0543 465 MobiDBLite consensus disorder prediction 199 242 - -
Vvi15g0543 465 MobiDBLite consensus disorder prediction 140 299 - -
Vvi15g0543 465 Pfam Helix-loop-helix DNA-binding domain 287 332 IPR011598 GO:0046983
Vvi15g0543 465 Coils Coil 321 341 - -
Vvi15g0543 465 CDD bHLH_AtPIF_like 283 336 IPR047265 -
Vvi15g0543 465 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 459 IPR031066 -
Vvi15g0543 465 SMART finulus 288 337 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0543 Vvi-Chr15 13708626 13711900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0543 1 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 51.556 8.89e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi15g0543 HLH 7.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0543 - - vvi:100244381 811.601