Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1878 ATGGCGGAAGCAAAAGACCCCGCGATTAAGCTGTTTGGGAAGACGATTCCGCTGCCGGAGGTAGCGACGGCGGCGGCCGGAAACGACTCTCCTTCCGGTGCTACTGTTGGCGGCGGTGGTGAGGATTGGGTGGATCAGAATCGGGCGACGAACTCTTCGCCGGAGGAGGACTGCGTCAGGGCCGGAGAGGAAGGGCGGGAAGTGGACAAGGACACTTCAGGAGGAAAAGTTACTGACACTAGACAGGAAGATGGAGCTCGATCTTCTACGTCAGAAGAGTTTACAGATCCAGATGCAAATTCAGGGGTAAATGAAAATCCTAAAACACCATCAGCCGACAAAGAAACTGCAACATTAAAGTGTTCGAAGAATGAAGAGGAACAGAGTGAGACAAGTATCTCACAAGAGAAGACCCTGAAGAAACCAGACAAGATACTTCCATGCCCCCGCTGTAATAGTATGGACACCAAGTTCTGTTATTACAACAACTACAATGTCAACCAACCCCGACACTTCTGCAAGAACTGTCAGAGATATTGGACAGCCGGGGGAACCATGAGGAACGTGCCTGTGGGTGCAGGTCGTCGTAAGAACAAGAATTCAACCTCTCACTATCGGCACATAACTGTCTCTGAAGCTCTTCAGAGTGCTCGAACTGATGTTCCCAATGGAATCCACCACCCTGCATTGAAAACCAATGGCACCGTCCTGACTTTTGGCTCAGACACCCCCCTTTGTGAATCAATGGCTTCTGTTTTGAACCTTGCTGAAAAGACAATGAGAAACTGCACTCCAAATGGATTTCATAAACCAGAAAAGCTAAGAATTCCAGTTCCTTATGGAGGTGGAGAAAATGGTGATGATCACTTGAGCAAATCTTCAGTCACGGCTTCAAATTCAAAGGAGGAGGCAGGCAAAACTGCCTTGCCAGATCAAGTGATGCGAAATTGTCATGCGTTTCCTCCTCAGATACCATGCTTTCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCAGCTCAGTGGAGCCCTCCAGTACCTGCCATCCCTCCAGTACCCCCTCCTGCTTTCTGTCCTTCAGGTTTTCCTATGCCATTCTACCCTGCAGCTGCTTATTGGGGTTGTACAGTACCTGGAGCTTGGAATATCCCATGGGTTCCTCAGCCATCTGCGCTAAACCACACAGCCCCAAGCTCTGGTCCTAACTCTCCGACCTTAGGTAAGCATTCAAGGGACGAGAATATGCTTAAAGCAAGCAACTTTGGGGAAGAGGAACTACAGAAAGAGAACAATTCTGAGAGGTGTCTTTGGATTCCAAAGACCTTGAGGATTGATGATCCAGGAGAAGCTGCAAGGAGCTCTATATGGGCAACGCTAGGAATCAAGAATGACAAGGCGGATCCAATTAGCGGGGGCAGACTCTTTAAGTCTTTCCAATCAAAAGCTGATGAAAAGAATCACATAGCTGAAACCTCTCCAGTACTGCAAGCCAATCCTGCAGCATTGTCTAGGTCACTCAACTTCCATGAGAGCTCATAA 1536 0.4876 MAEAKDPAIKLFGKTIPLPEVATAAAGNDSPSGATVGGGGEDWVDQNRATNSSPEEDCVRAGEEGREVDKDTSGGKVTDTRQEDGARSSTSEEFTDPDANSGVNENPKTPSADKETATLKCSKNEEEQSETSISQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITVSEALQSARTDVPNGIHHPALKTNGTVLTFGSDTPLCESMASVLNLAEKTMRNCTPNGFHKPEKLRIPVPYGGGENGDDHLSKSSVTASNSKEEAGKTALPDQVMRNCHAFPPQIPCFPGAPWPYPWNSAQWSPPVPAIPPVPPPAFCPSGFPMPFYPAAAYWGCTVPGAWNIPWVPQPSALNHTAPSSGPNSPTLGKHSRDENMLKASNFGEEELQKENNSERCLWIPKTLRIDDPGEAARSSIWATLGIKNDKADPISGGRLFKSFQSKADEKNHIAETSPVLQANPAALSRSLNFHESS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1878 511 MobiDBLite consensus disorder prediction 118 138 - -
Vvi14g1878 511 Pfam Dof domain, zinc finger 143 200 IPR003851 GO:0003677|GO:0006355
Vvi14g1878 511 MobiDBLite consensus disorder prediction 23 138 - -
Vvi14g1878 511 PANTHER CYCLIC DOF FACTOR 2 1 511 IPR045174 GO:0003700|GO:0006355
Vvi14g1878 511 MobiDBLite consensus disorder prediction 57 91 - -
Vvi14g1878 511 MobiDBLite consensus disorder prediction 289 305 - -
Vvi14g1878 511 ProSitePatterns Zinc finger Dof-type signature. 148 184 IPR003851 GO:0003677|GO:0006355
Vvi14g1878 511 ProSiteProfiles Zinc finger Dof-type profile. 146 200 IPR003851 GO:0003677|GO:0006355
Vvi14g1878 511 MobiDBLite consensus disorder prediction 277 308 - -
Vvi14g1878 511 MobiDBLite consensus disorder prediction 92 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1878 Vvi-Chr14 29617523 29620260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1878 6 511 C2C2-Dof Transcription Factor Family AT5G39660 46.756 1.53e-123 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi14g1878 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1878 - - vvi:100254372 1039.64