Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0355 ATGGTTTTCTCATCCGTTCCGGTTTATCTAGATCCACCCAACTGGCAACAGCAAGCAAATCATCAACCAGGAGGGAGCAATGACAATCCCCATCTTCCACCGCAGCAGGCGCCCCCGCCGCTGCCTCCAGTTGGCGGAGGAGGCAGTGGCGGTACTGGCACAATCAGGCCTGGTTCAATGGCCGATCGGGCTCGGCTAGCTAAGTTGCCACAGCCGGAGACGGCACTGAAATGTCCTCGATGCGAATCTACCAATACTAAGTTTTGCTACTTCAATAATTATAGCCTCTCTCAGCCTCGTCACTTTTGCAAGGCGTGTCGGCGCTACTGGACTAGAGGAGGTGCACTAAGGAACGTGCCTGTAGGGGGAGGTTGTCGGAGGAATAAGAGAAGCAAAGGCAATAGATCAAAGTCTCCAGTCACTGGCGAGCGTCAGGGTGGTTCCAGCTCCGCCAGTGCAGTTCCTTCCAATAGCTGCACGTCTGATATGATAGGCCATTTGCCCCCGCCACCACCACCACCCCAATTATCCTTTTTGCCCCCTTTGCATCACCTTGCTGACTACGGGGCCGGGGACATTGGCTTAAATTTCGGTGGAATTCAGCCACCTGTGGCAGTATCGGGTGGCGGTAACAGCGGAACTGATATAGAATTCCCGATTGGTAGCTGTTCAGGTGGTGGTGGGCCAATTTTATCAGGTGGGCTTGCCGAGCACTGGAGACTGCAGCAAGTGCAGCAGTTCCCTTTCTTGGCTGGATTGGAGCCACCTTCTGGGTTATATTCATTTGAGGGTGAAGGTACTGAGCCACCGAGTTACCTAGGGGGATCGGGCCATCTTCGAGCTAAGGCCTTGGATTCTGGAGTTACTCAGATGACCGCGGTGAAGATAGAAGAAAATCAAGGGTTGAATTTATCAAGGAATTTTTTGGGTCTTCCAGGAAATGATCAGTACTGGAGCGGCAATACATGGAATGATCTCTCTGGTTCTGTTAAAGCGAAATCAGCTCAAAGATAA 1014 0.5207 MVFSSVPVYLDPPNWQQQANHQPGGSNDNPHLPPQQAPPPLPPVGGGGSGGTGTIRPGSMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSKGNRSKSPVTGERQGGSSSASAVPSNSCTSDMIGHLPPPPPPPQLSFLPPLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPILSGGLAEHWRLQQVQQFPFLAGLEPPSGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQMTAVKIEENQGLNLSRNFLGLPGNDQYWSGNTWNDLSGSVKAKSAQR* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0355 337 MobiDBLite consensus disorder prediction 11 31 - -
Vvi13g0355 337 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Vvi13g0355 337 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Vvi13g0355 337 MobiDBLite consensus disorder prediction 138 163 - -
Vvi13g0355 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 157 IPR045174 GO:0003700|GO:0006355
Vvi13g0355 337 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Vvi13g0355 337 MobiDBLite consensus disorder prediction 11 58 - -
Vvi13g0355 337 MobiDBLite consensus disorder prediction 120 179 - -
Vvi13g0355 337 MobiDBLite consensus disorder prediction 165 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0355 Vvi-Chr13 3000612 3001876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0355 16 322 C2C2-Dof Transcription Factor Family AT3G55370 42.169 7.78e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi13g0355 zf-Dof 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0355 - - vvi:100258172 587.415