Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0224 ATGAGGAGTTTTGAGATGAATGTTAACGGTCCTTGGACCAAAGGGTCAGCCGAACTTAACCACCATGCACAAGATGAGCAAAAAAATATAAGGGACAAAGTTGTGGGTGAGGGCCATGGCCTATCCGAGGAAGATGAATCGAGGATTAATGAGGATGTGGAAGATCTGAATGATGGGCGAATAGGGTCAGTCCAGGCAGTCCAGGGCGTTCTGCATGGACCACAGCAACAGCCTCAAGGGCCTATTGTTCGTTGGGAAAGGTTTCTCCCCCTGAGGTCTTTGAAGGTTCTACTGGTGGAAAATGACAATTCAACTCGCCAGGTTGTCAGTGCATTACTTCGAAATTGCAGTTATGAAGTTACTGCTGTAGCAAATGGTGTACAAGCATGGAGCATCTTAGATGATCTAACCAATCATGTAGACCTTGTTCTGGCCGAGGTAGCATTGCCTTCTTTATCAGGCATTGGCCTTCTTTGCAAGATTATGAACCATAAAGCATGCAAGAATATCCCTGTGATTATGATGTCATCCCATGATTCTGTGGGCATAGTCTTTAAATGTTTGTCAAAGGGTGCAGTTGACTTTTTTGTGAAGCCTATTCGAAAAAATGAGCTTAAAAACCTTTGGCAGCATGTGTGGAGGAAATTCCACAGGTTTAGCGGTAGTGAAAGTGAAAGTGAAAGTGGTATACGGACTAAAAAATCTGCAAAGTCAAAGAGTGTTGCTGGGTCAGACAACAACACTGGCAGCAATGATGAGGATAATGGAAGTATTGGTTTGAATGTTAGGGATGGAAGTGACAATGGAAGTGGTACTCAGAGTTCTTGGACTAAAATGGCAGTAGAAGTTGACAGCCCCAAACCAATGCAACCATGGGACCAATCGGCTGATCCTCCAGATAGCACTTGTGCACAGGTTACCCAATCATGGCCTGAAGCATTTGGCAACTACCAGGTGCCCATGACTTCCTCCAAGGATTACCAAGAACAAGATGATGAACTTGATAATGTTGAAATGGGCAAAGACTTGAAGATAGGAGTACCTAGAAACTCAAATTTACAGCTTCAAGATGATGTAGTAGGCGCTAATAAGGATAAATTTCATGAATTGACCTTGAAGAAAGATGATGAAAAATTAGAGAACAGACAAATGGACCTCAACAGTAACAAGCCAAATGATGAATTGGATAAAGAAGCTGTCGATCTGATGAGTGTCATTGCCAACAATACCAATCCTCAGAAAAAAAGTATGGGCTTCAAAACTCCAAGTGGCCTCTCTGAGGTCCCTGAAACTAAAGATAAGGCCATGTACGACAAAAAGGAAATACCTTCCCTTGAGCTCAGTTTGAAGAGGCTGAGAGATACTGGAGGTACTGATACCAATCCCCATGACCAAATCATTTGGAGACATTCCGACCTTTCAGCCTTTTCAAGGTATAATTCTGCTTCAACTGCTATTCAAGCTTCAACTGGCAATGTAGGTAGCTGTTCTCCACTTGATAACAGCTCAGAAGCAGCAAAGACAGAATCCATGCAAAATTTCCAATCTAATTCGAATGGCACTCCTCCCAACCAGAGTTCCAATGGCAGTAGCAACAACAACATGGGCTCTACTACTGATGATTTTTACACCAAGCCAGCAGCATTCGATGATAAACCAGATTCCAAATCTGCAGTCAAACATCTCCAGCACTCTGCTTTCCAACCAGTACAGAATACAATTTTGGCCGATTTTGCAAATGCCAATACAATTTTGGCCCACCCAAGTGCCATGCCCCCACAGGTCCAAATCCAGAACCACCATTACTATTACCACCACCATGTCCATAATATATCACAGCAACAGATACGCATCCATGATGATTTGGCTTTGACCAACATGGCAAAATCTGCTCCACAGTGTGGGTCATCCAATGTGTTGAATGCGCCTGTTGAAGGTTATGCCTGTAATCACAGTTTGAATGGGAGTGCATCAGGAAGTAACCATGGTAGCAACGGCCAAAATGGGAGTACCACTGCTGTAAATGCCCAAGGAACAAATATGGAAAGTGATGATGGAATAGCTGGAAAAGGTGGAGCAGGTGGAGGAAGTGGGAGTGGAAGTGGAAGCAGGAGCGGAGTAGATCAAAACCAATATGCACAAAGAGAGGCTGCATTAAACAAATTCCGCCAGAAAAGGAAAGAACGATGCTTTGAGAAAAAGGTACGATACCAAAGCAGGAAGAGACTGGCCGAACAGAGACCACGCATTCGAGGACAATTTGTTCGTAGGGTATTCCATGATATTAACAGCGAGGATGCAGACAGCTAA 2310 0.4368 MRSFEMNVNGPWTKGSAELNHHAQDEQKNIRDKVVGEGHGLSEEDESRINEDVEDLNDGRIGSVQAVQGVLHGPQQQPQGPIVRWERFLPLRSLKVLLVENDNSTRQVVSALLRNCSYEVTAVANGVQAWSILDDLTNHVDLVLAEVALPSLSGIGLLCKIMNHKACKNIPVIMMSSHDSVGIVFKCLSKGAVDFFVKPIRKNELKNLWQHVWRKFHRFSGSESESESGIRTKKSAKSKSVAGSDNNTGSNDEDNGSIGLNVRDGSDNGSGTQSSWTKMAVEVDSPKPMQPWDQSADPPDSTCAQVTQSWPEAFGNYQVPMTSSKDYQEQDDELDNVEMGKDLKIGVPRNSNLQLQDDVVGANKDKFHELTLKKDDEKLENRQMDLNSNKPNDELDKEAVDLMSVIANNTNPQKKSMGFKTPSGLSEVPETKDKAMYDKKEIPSLELSLKRLRDTGGTDTNPHDQIIWRHSDLSAFSRYNSASTAIQASTGNVGSCSPLDNSSEAAKTESMQNFQSNSNGTPPNQSSNGSSNNNMGSTTDDFYTKPAAFDDKPDSKSAVKHLQHSAFQPVQNTILADFANANTILAHPSAMPPQVQIQNHHYYYHHHVHNISQQQIRIHDDLALTNMAKSAPQCGSSNVLNAPVEGYACNHSLNGSASGSNHGSNGQNGSTTAVNAQGTNMESDDGIAGKGGAGGGSGSGSGSRSGVDQNQYAQREAALNKFRQKRKERCFEKKVRYQSRKRLAEQRPRIRGQFVRRVFHDINSEDADS* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0224 769 MobiDBLite consensus disorder prediction 658 710 - -
Vvi13g0224 769 MobiDBLite consensus disorder prediction 489 555 - -
Vvi13g0224 769 Pfam Response regulator receiver domain 96 207 IPR001789 GO:0000160
Vvi13g0224 769 SMART REC_2 94 209 IPR001789 GO:0000160
Vvi13g0224 769 MobiDBLite consensus disorder prediction 489 541 - -
Vvi13g0224 769 ProSiteProfiles Response regulatory domain profile. 95 213 IPR001789 GO:0000160
Vvi13g0224 769 SUPERFAMILY CheY-like 92 220 IPR011006 -
Vvi13g0224 769 Gene3D - 93 255 - -
Vvi13g0224 769 MobiDBLite consensus disorder prediction 235 280 - -
Vvi13g0224 769 FunFam Two-component response regulator-like PRR37 94 254 - -
Vvi13g0224 769 MobiDBLite consensus disorder prediction 411 431 - -
Vvi13g0224 769 CDD psREC_PRR 96 199 - -
Vvi13g0224 769 PANTHER TWO-COMPONENT RESPONSE REGULATOR 94 414 IPR045279 GO:0009736
Vvi13g0224 769 MobiDBLite consensus disorder prediction 658 682 - -
Vvi13g0224 769 Pfam CCT motif 715 757 IPR010402 GO:0005515
Vvi13g0224 769 ProSiteProfiles CCT domain profile. 715 757 IPR010402 GO:0005515
Vvi13g0224 769 MobiDBLite consensus disorder prediction 224 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0224 Vvi-Chr13 1859685 1891150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0224 170 758 Response Regulator Gene Family AT5G02810 46.003 5.10e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vvi13g0224 Response_reg 3.9e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0224 K12129 - vvi:100256937 1421.37