Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0265 ATGGCAAACCAGGTCCATGCCGCCCAGGATGCGCCAGGAATCAAGCTGTTTGGGGCAACGATTGCGTTGCATGGGGGAGAGGTAAAGGAGGAAGCGAATAACAAAGGTGATCACAAGGAAGAAAAGAGGCCTGAAAAGATCATACCATGCCCAAGATGCAAGAGCATGGAGACCAAATTTTGTTACTTCAATAATTATAATGTTAACCAGCCTCGTCACTTCTGCAAGGGTTGCCAGAGGTACTGGACCGCCGGTGGAGCCCTGAGGAACGTGCCCGTCGGAGCTGGTCGCCGGAAAAGTAAGCCGCCCTGTCGTGGTGTGGCCGGGTTCTTGGAGAGTTGCTTGTTTGATGCTTCAGCTGGGGTGCACCAGTTTGACCTCGAAGGCGTTGTGGTCGAGGAGTGGCACATGGGTGGTTTCCGGCATGCTTTCCCGGCTAAGAGGCGTAGGAGCAGCTCATCGGGAGGTCAAACTTGTTGA 480 0.5396 MANQVHAAQDAPGIKLFGATIALHGGEVKEEANNKGDHKEEKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPCRGVAGFLESCLFDASAGVHQFDLEGVVVEEWHMGGFRHAFPAKRRRSSSSGGQTC* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0265 159 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
Vvi10g0265 159 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Vvi10g0265 159 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Vvi10g0265 159 PANTHER CYCLIC DOF FACTOR 2 30 104 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0265 Vvi-Chr10 2577241 2577720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0265 7 159 C2C2-Dof Transcription Factor Family AT1G29160 58.192 1.37e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi10g0265 zf-Dof 4.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0265 - - vvi:100244549 343.584