Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0152 ATGTTGGGTAACTGTGAGAAGATGGTGGTCATCTCATCAACTACAAACGATTGGCCAGAGAATCAGATAGATGATAAGGGGTTGATGGCTTCAACGGGTAGGGTTATGGAGAAACCAGGCCAAGAGCAGCAAGCCCTCAAGTGTCCTCGTTGTGATTCCTCCAATACCAAGTTCTGCTACTACAACAACTACAGCTTGTCTCAGCCTAGGCACTTCTGCAAGGCCTGTAAGCGTTACTGGACTAGAGGTGGAACCCTCAGAAACGTTCCTGTAGGAGGTGGGTGCAGGAAGAACAAGCGTGTGAAGAGGCCAGCTTCTTCCGTTGATGCTCCCTCTTCTGCTCCTACTGCTGCTCTTAACCCTCCCCCTCCATCCCAGATCGACCTATCCGCTTCGTCAAACCATGTTACTCCTTTGTTTTATGGCTTACCTAGTAATCCTTCCGAGCTCAATCTTCCATTTCCAAGGTTCAATTCTAGAGCCTCCAATGAGGATACTGTTTCTGGGTATGATCTCCAGCCTCAATTGGGTGCTCTTGGATTAGGATTTTCTTCTGGGATCATAGCCAATGATACTCGCACTGATGATTACCGAAATGGCTTTAATCCAGCTAAACAAATCCAAGATTTGGTTACTTCAAGCTCACTTCTCTCAAACTATTCCATCTTTGGATCTTCATCTTCCACCACTACTCCAACAATGGCTTCTTTGATCAATTCTAGCCTGCAACAGCAGAAGTTCATGAATGGTGATCTAAAAGAAAGTCGAGGAGCTAATCATTTTCAGCCCTTAGTACCCTATGAAGACCTGCAAATATCAGGGAACACCAGCATGGCCATGAAAGAAGTGAAAAGCGAACATGGCCACAACACATTGGAGTGGAATAGTGTTCCTTGCCAGAATCAGATCGAGCAAATCGGCTCCTCTGATCCTTCTCTTTACTGGAACTTAACGAGTCTCGGCGCCTGGTCGGATCTTCCAAACATGGGGTCTTCCGTCACTTCTCTAATCTAG 1014 0.4635 MLGNCEKMVVISSTTNDWPENQIDDKGLMASTGRVMEKPGQEQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPASSVDAPSSAPTAALNPPPPSQIDLSASSNHVTPLFYGLPSNPSELNLPFPRFNSRASNEDTVSGYDLQPQLGALGLGFSSGIIANDTRTDDYRNGFNPAKQIQDLVTSSSLLSNYSIFGSSSSTTTPTMASLINSSLQQQKFMNGDLKESRGANHFQPLVPYEDLQISGNTSMAMKEVKSEHGHNTLEWNSVPCQNQIEQIGSSDPSLYWNLTSLGAWSDLPNMGSSVTSLI* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0152 337 MobiDBLite consensus disorder prediction 91 131 - -
Vvi10g0152 337 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Vvi10g0152 337 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Vvi10g0152 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 248 IPR045174 GO:0003700|GO:0006355
Vvi10g0152 337 Pfam Dof domain, zinc finger 44 100 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0152 Vvi-Chr10 1336331 1337497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0152 1 337 C2C2-Dof Transcription Factor Family AT1G28310 40.385 7.84e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi10g0152 zf-Dof 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0152 - - vvi:100252054 657.521