Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0151 ATGCAGCAAGATAGAGATAAAGGAGGAGGATTGGAAGACGTGGATCCTCCAGATCGGCGATTGAAGCCAGCGCAATCCGAGAATCAACAGCAGCAGCTACCTCAGAAATGTCCTCGATGTGATTCTATCAACACCAAGTTCTGCTATTACAACAATTACAGCCTTTCTCAGCCTCGCTACTTCTGCAAAACTTGTCGAAGGTACTGGACTCAAGGTGGAACTCTAAGGAACGTCCCCGTCGGCGGTGGTTGCCGGAAGACTAAGCGCAAACCATCCGCTTCTGGCGACAATTCGCGCTCTCAGTTACCAACCCAACAACAGCAACAAAATTTAGCCGCACCGCCGCCAAACATCATATCTACAAATTCTGGTGTAGCCGTGGGGCCAGCTCTGAGGATTGCAGAACCAGCCAACTTATCTCCGGCACCAGCACCTGCATCTGCACCGACGCTTTCTTCTGTCAACCCTTACTATCCTGCTGGGGCTTTCTTATCCTCTTTACCAGCGATGCGTCCTCTCAACCAGCCACAGCCACAGCCCTTCAATCAACCAGTCAACGTGGGTCGCGATTTTGGAGGTTCTAATTTGGCTATTTTACAGGGATTCAATGTTCCTTCTTTGGGTTCACAACAGCAGCAGCGTCAGCAGGCAGAATTCTACCAGATGGGTAATAGAGACAGGAACATAGAAAGCTTGTATGGTTCTGGAGAAGACTTGATTCAATCAAGCAGGCCTACTGGACATCAGAATAATTGGCATCAGACTTTCATCAACCCTACCGCTCCAGACTCCAACCTTTGGAGTATCGGCGGTAGCAGCAACAACAACAGCAACGCCGCTAGCTCGTCCTTCAATCAAAATCACTGGGCTGATCTGCAGGGATATGGCCCTCCTCCATGA 900 0.4989 MQQDRDKGGGLEDVDPPDRRLKPAQSENQQQQLPQKCPRCDSINTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKTKRKPSASGDNSRSQLPTQQQQQNLAAPPPNIISTNSGVAVGPALRIAEPANLSPAPAPASAPTLSSVNPYYPAGAFLSSLPAMRPLNQPQPQPFNQPVNVGRDFGGSNLAILQGFNVPSLGSQQQQRQQAEFYQMGNRDRNIESLYGSGEDLIQSSRPTGHQNNWHQTFINPTAPDSNLWSIGGSSNNNSNAASSSFNQNHWADLQGYGPPP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0151 299 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Vvi10g0151 299 MobiDBLite consensus disorder prediction 76 121 - -
Vvi10g0151 299 Pfam Dof domain, zinc finger 35 89 IPR003851 GO:0003677|GO:0006355
Vvi10g0151 299 MobiDBLite consensus disorder prediction 1 36 - -
Vvi10g0151 299 MobiDBLite consensus disorder prediction 1 22 - -
Vvi10g0151 299 MobiDBLite consensus disorder prediction 94 121 - -
Vvi10g0151 299 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Vvi10g0151 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 243 IPR045174 GO:0003700|GO:0006355
Vvi10g0151 299 MobiDBLite consensus disorder prediction 237 290 - -
Vvi10g0151 299 MobiDBLite consensus disorder prediction 237 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0151 Vvi-Chr10 1318508 1319407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0151 14 133 C2C2-Dof Transcription Factor Family AT5G60200 48.780 5.31e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vvi10g0151 zf-Dof 6.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0151 - - vvi:100246919 545.428