Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1031 ATGGTTTTTACTTCCATCCCAGATTCTTATTTTGATGCATCCAATTGGCACCAACCCGGAGGCAGTGACTCCAACTCTCAGCAGCTGCTTCAACCACCACCGCCACCACTTACGGTTGCAATGCAGTCTCATGGAGAGGGTTCAATCAGGCCAGGGTCCATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCCCGCCACTTCTGCAAGACCTGCAGGAGGTACTGGACCAGAGGCGGCGCCTTAAGGAGTGTCCCCGTGGGCGGAGGCTGCAGGAGGAACAAGAGGAGCAAAGGTACCGGCGGCAGTGGAGGCGGCTCCAACTCTCCGGCAACCTCTGACCTCGTGGGATCTTCGAAGAGTGAGAGAATAGGGCTTGCACCCCAAATTCCACCCTTCAGATTCATGCCTCCATTGCATCAACTTGGTGAGTTTGGAGATGGAGACATAAGCCTAAACTATGGCCTCAGTTATGGCCCAGTGGGAGGAGTAGGAGACTTGAGTTATCAAATTGGAACAAGTGCTTTATGTGGTGGTGCCACTTCAATCTTCACAGCACCTGGTTTTGACCAATGGAGAATGCCACAGCAGTTTCCTTTCTTGGCCTCCTTGGAAGGTTCATCACCAGCTTCTAATTTATACCCTTTTGATGGTAGTGCTGAGGTGAGTGGATATATAAGGCCAAAGGTTTCAACTTCTGGGATCATGGCTCAGATAGCTTCAGTGAAAATGGAAGAACGCAAGGAACCTGATTTGTCAACACTTTTCTTGGGAAACGATAATCCAGTGAATGAACAATATTGGACCAGTGCAAGTTCTGCATCTTGGACAGATATTTCTGGGATTAGCTCCTCTTTCGCTGCAAGCAACCATCTATAG 963 0.4974 MVFTSIPDSYFDASNWHQPGGSDSNSQQLLQPPPPPLTVAMQSHGEGSIRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGTGGSGGGSNSPATSDLVGSSKSERIGLAPQIPPFRFMPPLHQLGEFGDGDISLNYGLSYGPVGGVGDLSYQIGTSALCGGATSIFTAPGFDQWRMPQQFPFLASLEGSSPASNLYPFDGSAEVSGYIRPKVSTSGIMAQIASVKMEERKEPDLSTLFLGNDNPVNEQYWTSASSASWTDISGISSSFAASNHL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1031 320 MobiDBLite consensus disorder prediction 14 36 - -
Vra9g1031 320 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 14 313 - -
Vra9g1031 320 Pfam Dof domain, zinc finger 69 124 IPR003851 GO:0003677|GO:0006355
Vra9g1031 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 313 IPR045174 GO:0003700|GO:0006355
Vra9g1031 320 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Vra9g1031 320 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Vra9g1031 320 MobiDBLite consensus disorder prediction 128 146 - -
Vra9g1031 320 MobiDBLite consensus disorder prediction 115 146 - -
Vra9g1031 320 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1031 Vra-Chr9 13000770 13002205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1031 29 313 C2C2-Dof Transcription Factor Family AT3G55370 39.498 4.54e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra9g1031 zf-Dof 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1031 - - vra:106773377 629.017