Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0224 ATGCAAGATCCGACAGCATTTCAAGGTTTGAAGCACCCTCAGTTTCCCGAACAAGAACAACTCAAATGCCCGCGTTGTGACTCCACGAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGTCACTTTTGCAAGAACTGCAGAAGGTACTGGACAAAGGGTGGTGCTTTGAGAAACATCCCTGTTGGGGGTGGAAGCAGAAAGAGCACAAAACGTTCTTCAACCTCAAAACGGTCCTCTGCGCCGACTTCTTCTGCTGTTTCTGAGGCTGACCCGACCCGGATTTGCACCAACCCGGTTGAGCAAGACAGTGGGGCGCTCAACATTGGTGGCACCTTCAGTTCCCTGTTGGCTTCATCTGGCCACTTTGGAACCCTCTTGGAGGGTCTGAATCCAACTGGGTCAGGTCTCAAAATGGGTGAATTTGGGCAGGGTGTGAGTTCTGACCTGGGTTTGAATTCGGATTCGGGTTCAAACCCGGGTTTGCAGCTTCAGAGTAATGGGAGTTCAGATGGTTTTCTGGGTATGCAGAATGGGGAATCAACCTGTTGGAATGGTGGTCATGGTTGGTCTGATCTTGCAATATACACACCTCGCCCGAGTTTTCAATAG 624 0.5048 MQDPTAFQGLKHPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSTSKRSSAPTSSAVSEADPTRICTNPVEQDSGALNIGGTFSSLLASSGHFGTLLEGLNPTGSGLKMGEFGQGVSSDLGLNSDSGSNPGLQLQSNGSSDGFLGMQNGESTCWNGGHGWSDLAIYTPRPSFQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0224 207 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Vra9g0224 207 MobiDBLite consensus disorder prediction 62 105 - -
Vra9g0224 207 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Vra9g0224 207 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 207 IPR045174 GO:0003700|GO:0006355
Vra9g0224 207 MobiDBLite consensus disorder prediction 152 176 - -
Vra9g0224 207 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 3 207 - -
Vra9g0224 207 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Vra9g0224 207 MobiDBLite consensus disorder prediction 70 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0224 Vra-Chr9 1607298 1608955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0224 12 131 C2C2-Dof Transcription Factor Family AT1G51700 56.429 1.17e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra9g0224 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0224 - - gmx:100790822 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0224 9 1607298 1608955 Vra9g0224 9 1607298 1608955 ECH
Vra5g2509 5 32030080 32032525 Vra9g0224 9 1607298 1608955 PCT