Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2599 ATGAATCAGAGGGGTTTAATATATAGCTTTGTTGCCAAAGGAACTGTTGTTTTAGCGGAACACACACAGTATACGGGGAATTTCAGTACCATTGCTGTTCAGTGCCTGCAGAAGCTACCTTCAAATAGCAGCAAATACACGTATTCCTGTGATGGGCACACCTTTAACTTCCTCATAGACAATGGATTTGTTTTCCTTGTTGTTGCCGATGAGTCAGTTGGAAGGAGTGTTCCTTTTGTATTTCTTGAACGGGTGAAGGATGACTTTATGAAGCGCTATGGAGCAAGCATTAAGAATGACAGTACCCATCCACTTGCTGATGATGACGATGACGACGATTTATTTGAGGACAGATTTAGCATTGCGTATAATCTTGATAGAGAATTTGGACCAGCACTCAAGGAGCATATGCAGTATTGCTTGAATCATCCAGAAGAAATAAGTAAACTTTCAAAGTTGAAGGCTCAAATAACTGAGGTTAAGGGGATAATGATGGACAATATTGAGAAGGTTTTGGATCGTGGAGAGAAGATTGAGCTGCTGGTGGACAAAACAGAAAACTTGCAGTTCCAGGCTGACAGCTTCCAGAGGCAGGGCAGGCAGTTGAGAAGGAAGATGTGGCTGCAGAATCTCCAAATGAAGCTGATGGTGGGAGGAGGAATCCTTACCTTAATCATAATTCTGTGGGTTATTGCCTGTGGGGGTTTTAAATGTTGA 717 0.4226 MNQRGLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKYTYSCDGHTFNFLIDNGFVFLVVADESVGRSVPFVFLERVKDDFMKRYGASIKNDSTHPLADDDDDDDLFEDRFSIAYNLDREFGPALKEHMQYCLNHPEEISKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQNLQMKLMVGGGILTLIIILWVIACGGFKC* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2599 238 SMART Longin_2 31 111 IPR010908 -
Vra8g2599 238 SUPERFAMILY SNARE-like 6 100 IPR011012 -
Vra8g2599 238 Pfam Regulated-SNARE-like domain 32 101 IPR010908 -
Vra8g2599 238 Gene3D - 147 233 - -
Vra8g2599 238 Gene3D Longin domain 1 146 - -
Vra8g2599 238 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 149 209 IPR042855 -
Vra8g2599 238 PANTHER SNARE PROTEINS 1 238 - -
Vra8g2599 238 SUPERFAMILY SNARE fusion complex 144 210 - -
Vra8g2599 238 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 727 1 238 - -
Vra8g2599 238 PRINTS Synaptobrevin signature 154 173 IPR001388 GO:0016021|GO:0016192
Vra8g2599 238 PRINTS Synaptobrevin signature 174 193 IPR001388 GO:0016021|GO:0016192
Vra8g2599 238 PRINTS Synaptobrevin signature 210 229 IPR001388 GO:0016021|GO:0016192
Vra8g2599 238 Pfam Synaptobrevin 148 234 IPR042855 -
Vra8g2599 238 ProSitePatterns Synaptobrevin signature. 167 186 IPR001388 GO:0016021|GO:0016192
Vra8g2599 238 CDD R-SNARE 149 207 - -
Vra8g2599 238 CDD Longin 7 140 IPR010908 -
Vra8g2599 238 ProSiteProfiles Longin domain profile. 6 133 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2599 Vra-Chr8 43928773 43932466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2599 1 238 Miscellaneous Gene Families AT3G54300 87.395 5.36e-158 436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2599 8 43928773 43932466 Vra8g2599 8 43928773 43932466 ECH