Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2574 ATGGCTACCGATGCCCGTGACTCGCGTCACAAGCATCGCCGATCACCCTCTCCGGAGGATGTGGACAGATCCTCGAAGCGCCACAAGCATCGCCACCGCCATCGCCACCGCCACGGTAGCAAAAAGCGCGAGGAAGATATTGAATTCGATGATCGAACCATTGCTGCTGTTCCTTCTCCAACTCCGCATAGACATCTCCCGGAGGACGATGTGGAGGAAGGAGAGATCCTCGATGATGAAGCTCTCGATAGTGAGGTAGGGAAAAAAGAGACGGAATCTGATGTCGAACCTGGTGAAATCAAGGTGACCGGAGATGGAGATGTTCAATCTGATAATCAAAATTCGGGACACCTCACTGTAAATTCAGAAACCAATGAGGACATCCGGGTTGATAAATTTATTAGCCCCACAAACAATGCAGATGGTGTCTCTCCTAATCGTTTAAGTGCTGAGACTCAAGATGGAAAGCATGCTACTGATGGTCTGGACAATGGTTATTTGAATCCTAAATCTTCCAAGGCGGATAAGTGGCGGAATGGGGAACTTGGACGTTTTAAAGGGAATGAGAAACTAAAAGGTGACTTTGATGTGCTGGAGGCTGATGTTAGGAAAACACATTTCCATAGGAATTCATCATCCGAAAGTGGGGGAGACAAAGGTAGAATATCAGGAAGTTCTCCTTCTCATGGCAGATATAGAAGTCGTTCAAGATCAATTGGTCATACAAGAGACAGGTCTCGTTCTCGTAGTGTCATAGATGAATATGTTCATTCCAAGAGAAGGCGCTCTGAATATGACTATGATGAGGAAAGAGTGAGGGCACGTGGAAGGGAACATGGTCATGGAAGTGTGGTAGATGATAGAAGGGAATACAGTAGTGGATATCACAATCGCGAGGCCCATGATAGAGATAGGAGTAGGGATAGAGACTTGTACAGAGAAAAGAAACAAGAGGAAACAAGCAGGGGTAAGGAGATTGAGAGGGACCGCCAAAGGGTAAAGGAACGTGAAAGGAGCCGTGAGAGATATAAAAGGGATGTAGAAAAAGATAGGAGCAGGGAAAGGGAGGATAGGGACAGGAGGCAAGAAAAGGAAAGAGATAGGAGCTGGGAGACAGTGTTTGAAAGGGATATGAGAAGGGAAAAGGAAAGAGATAGGAGTAGGGACAGAACAAGAGATGCTAAGAGAGATAGAGACCTGGAGAATGAAAGGGATGATAAGAATCGAGAAAGGGATAATATTAAGGAGAGGGCAAGGCGAGATGATAGATATAGACACAAAGATAGAGACACTGCAAATGGTAAAGATAGGCACGCTCGTCATGAAGATGGTAATGACAATGGAGATAAATATAGAAAACATTCGAGACATGAAGAAAATGATTACCATTGGGATAGAAAAAGAAATTCTGTAAAGGATTATACCTCAAGGGGGGGAAGTACTGCAGAAGTGGATGAAAGCAAACTAACAAGCAGTGAGGTTGAACCAGATGACTTAGAGGAGGATACATTGCACTTACCTGACCAAGAAGAGGAAGATCTCAACAGGATCAAAGAAGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGAAGTGGTTGGAAATGAACGAAAAGACAAGGATACATACATTCAAACTGAAACCTCTGAAGTACATGATGGTAAGAATGATGATGCCGATTATGTGGAGCCATCATTTGCTGTTGGAAAATCTCCTGAAAATGTGACTGTTGCTTCTCAGAAGATATCTCTTGCTGGAGGCCTGGGAGAGGGTACTCCAAAGAGTGAAAGGTCAGAGGACAAGTACTGTGACGATATATTTGGGGAGACACCAACGGGAGTTCGAAAATCAGGAAAAGGTGATGGTTTAATGATTGAAAGGGTTGGCCTACATGACAACTGGGATGATGCAGAGGGATACTACAGCTATCGAATTGGTGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACACGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTGAAGGTGGGAAATGGTGAGCCAGAGGAAGTAGCAATAAAAATAATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTCCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCCTTGAAGCATCTCCGGAATTGTGGTGTTCTTCATTGTGACATAAAGCCAGATAATATGTTGGTAAACGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCAATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCAGAAATAATACTTGGCTTGGCATATGATCATCCATTGGATATTTGGTCCGTAGGCTGTTGTTTGTATGAGTTATATGTAGGTAAGGTTCTTTTCCCTGGGCTTACTAACAATGACATGCTACGACTTCACATGGAACTGAAGGGCCCCTTTCCAAAGAAGATGCTACGAAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGAATTTTCTTGCAACCGAGGAAGATCCTGTGACAAAAAAGGCCATAAAGCGGTTGATTCTCAACATTAAGCCAAAAGATATTGGGACACTCATCACTGGCTCTTCCGGGGAGGATCCAAAAATGTTGGCCAACTTTAGGGATCTTCTGGAAAAAGTTTTTGTCCTGGATCCAGACAAGAGGCTGACAGTGTCACAAGCTCTGAACCACCCATTCATCACTGGCAAGTGA 2943 0.4315 MATDARDSRHKHRRSPSPEDVDRSSKRHKHRHRHRHRHGSKKREEDIEFDDRTIAAVPSPTPHRHLPEDDVEEGEILDDEALDSEVGKKETESDVEPGEIKVTGDGDVQSDNQNSGHLTVNSETNEDIRVDKFISPTNNADGVSPNRLSAETQDGKHATDGLDNGYLNPKSSKADKWRNGELGRFKGNEKLKGDFDVLEADVRKTHFHRNSSSESGGDKGRISGSSPSHGRYRSRSRSIGHTRDRSRSRSVIDEYVHSKRRRSEYDYDEERVRARGREHGHGSVVDDRREYSSGYHNREAHDRDRSRDRDLYREKKQEETSRGKEIERDRQRVKERERSRERYKRDVEKDRSREREDRDRRQEKERDRSWETVFERDMRREKERDRSRDRTRDAKRDRDLENERDDKNRERDNIKERARRDDRYRHKDRDTANGKDRHARHEDGNDNGDKYRKHSRHEENDYHWDRKRNSVKDYTSRGGSTAEVDESKLTSSEVEPDDLEEDTLHLPDQEEEDLNRIKEESRRRREAIMEKYKKQHQQVEVVGNERKDKDTYIQTETSEVHDGKNDDADYVEPSFAVGKSPENVTVASQKISLAGGLGEGTPKSERSEDKYCDDIFGETPTGVRKSGKGDGLMIERVGLHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKVGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLAYDHPLDIWSVGCCLYELYVGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTLITGSSGEDPKMLANFRDLLEKVFVLDPDKRLTVSQALNHPFITGK* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2574 980 ProSiteProfiles Protein kinase domain profile. 662 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2574 980 MobiDBLite consensus disorder prediction 174 215 - -
Vra8g2574 980 MobiDBLite consensus disorder prediction 26 40 - -
Vra8g2574 980 MobiDBLite consensus disorder prediction 1 519 - -
Vra8g2574 980 MobiDBLite consensus disorder prediction 106 123 - -
Vra8g2574 980 SUPERFAMILY Protein kinase-like (PK-like) 649 979 IPR011009 -
Vra8g2574 980 MobiDBLite consensus disorder prediction 1 25 - -
Vra8g2574 980 MobiDBLite consensus disorder prediction 137 152 - -
Vra8g2574 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Vra8g2574 980 Coils Coil 326 346 - -
Vra8g2574 980 Pfam Protein kinase domain 664 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2574 980 SMART serkin_6 662 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2574 980 Gene3D Transferase(Phosphotransferase) domain 1 722 978 - -
Vra8g2574 980 Gene3D Phosphorylase Kinase; domain 1 632 721 - -
Vra8g2574 980 MobiDBLite consensus disorder prediction 216 233 - -
Vra8g2574 980 MobiDBLite consensus disorder prediction 81 101 - -
Vra8g2574 980 MobiDBLite consensus disorder prediction 237 473 - -
Vra8g2574 980 Coils Coil 397 420 - -
Vra8g2574 980 CDD STKc_PRP4 661 977 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vra8g2574 980 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 342 980 - -
Vra8g2574 980 PANTHER DUAL SPECIFICITY PROTEIN KINASE 342 980 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2574 Vra-Chr8 43703341 43709624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2574 669 978 MAP Kinase Gene Family AT4G01370 33.856 3.03e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vra8g2574 Pkinase 5.7e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2574 8 43703341 43709624 Vra8g2574 8 43703341 43709624 ECH